View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_13 (Length: 468)
Name: NF3229_low_13
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 47506469 - 47506897
Alignment:
| Q |
18 |
taaatatgtatataggtagagttgaattgaggaaagagctgtcatgcannnnnnnntaaaatgaaatgtgaccccaaaaaactcaatgaaggaaggggat |
117 |
Q |
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| T |
47506469 |
taaatatgtatataggtagagttgaattgtggaaagagctgtcatgcaggggggggtaaaatgaaatgtgaccccaaaaaactcaatgaaggaaggggat |
47506568 |
T |
|
| Q |
118 |
aagtgaacatgattgttttgtggtgggtgtgcattatacatacttataaaaaatttctttctgacacacttataataacgagtttatataccccacaacc |
217 |
Q |
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| T |
47506569 |
aagtgaacatgattgttttgtggtgggtatgcattatac----ttataaaaaatttctttctgacacacttataataacgagtttatataccccacaacc |
47506664 |
T |
|
| Q |
218 |
actaactcccataccacttatttcaacaaattaaaagtgtgtctgtttcaattcaatcatcgatcttatggtataataagagagtttgatattcacaaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
47506665 |
actaactcccataccacttatttcaacaaattaaaagtgtgtctgtttcaattcaatcatc----ttatggtataataagag--tttgatattcacaaat |
47506758 |
T |
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| Q |
318 |
cccaatgctttgactgtccctttctcttctcttgctgctattcattcaaatttgtcactcccgaaacccacggggcagtgtgctcacatggatgaagtga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47506759 |
cccaatgctttgactgtccctttctcttctcttgctgctattcattcaaatttgtcactcccgaaacccacggggcagtgtgctcacatggatgaagtga |
47506858 |
T |
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| Q |
418 |
gtatccaccattattaacataaccttgctggtgtctgtg |
456 |
Q |
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| T |
47506859 |
gtatccaccattattaacataaccttgctggtgtctgtg |
47506897 |
T |
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