View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_134 (Length: 247)
Name: NF3229_low_134
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_134 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 47002891 - 47003127
Alignment:
| Q |
1 |
gacaatcggaatggcagctgcttctctgattgaagtgaaacggttgtcagtggcaaaaggtgtaaaaggcaaccaaacaacactaccaattagtgttttc |
100 |
Q |
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| T |
47002891 |
gacaatcggaatggcagctgcttctctgattgaagtgaaacggttgtcagtggcaaaaggtgtaaaaggcaaccaaacaacactaccaattagtgttttc |
47002990 |
T |
|
| Q |
101 |
cttctagtcccacaattcttcttggttggttctggtgaagcattcatatacacaggacaacttgatttcttcataacacaatcaccaaaaggaatgaaaa |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47002991 |
cttctagtcccgcaattcttcttggttggttctggtgaagcattcatatacacaggacaacttgatttcttcataacacaatcaccaaaaggaatgaaaa |
47003090 |
T |
|
| Q |
201 |
caatgagcactggtctcttcctaacaactttatccct |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
47003091 |
caatgagcactggtctcttcctaacaactttatccct |
47003127 |
T |
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