View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_135 (Length: 247)
Name: NF3229_low_135
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_135 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 31781754 - 31781977
Alignment:
| Q |
7 |
gtgagatgaattaaaatcatattgcaaacttcttgaaacatacttaaaacatgatgatttttatgatctttgatggtgaaattttatttgaagaattaaa |
106 |
Q |
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| T |
31781754 |
gtgaaatgaattaaaatcatattgcaaacttcttgaaacatacttaaaacatgatgatttttatgatctt-gatggtgaaattttatttgaagaattaaa |
31781852 |
T |
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| Q |
107 |
attcattagagaagtttcaaaacttgaatcaaaatcaaggtataaatattgaatttcattaggtttttgtaatcttaaacaattaagatcaaatgacaac |
206 |
Q |
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| T |
31781853 |
attcattagagaagtttcgaaacttgaatcaaaatcaaggtataaatattgaatttcattaggtttttgtaatcttaaacaattaagatcaaatgacaac |
31781952 |
T |
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| Q |
207 |
catttcgatgaacacatgagttttg |
231 |
Q |
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| T |
31781953 |
catttcgatgaacacatgagttttg |
31781977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 38234188 - 38234120
Alignment:
| Q |
76 |
ttgatggtgaaattttatttgaagaattaaaattcattagagaagtttcaaaacttgaatcaaaatcaa |
144 |
Q |
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| T |
38234188 |
ttgatggtgaaagattatttaaataattaaaaatcattatttaattttcaaaagttgaatcaaaatcaa |
38234120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 48229199 - 48229312
Alignment:
| Q |
36 |
ttcttgaaacatacttaaaacatgatgatttttatgatctttgatggtgaaattttatttgaagaattaaaattcattagagaagtttcaaaacttgaat |
135 |
Q |
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| T |
48229199 |
ttcttgaaacatacctaaaacaagatgattcttatgatctt-gacggtgaaattatatttgaataattaaaagtcattagagaagttttaacagatgaat |
48229297 |
T |
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| Q |
136 |
caaaatcaaggtata |
150 |
Q |
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| T |
48229298 |
caaaataaagttata |
48229312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 27953709 - 27953828
Alignment:
| Q |
20 |
aaatcatattgcaaacttcttgaaacatacttaaaacatgatgatttttatgatctttgatggtgaaattttatttgaagaattaaaattcattagagaa |
119 |
Q |
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||||||| |||||||||||||||||| || ||||| ||| | | || ||||||||| |||||||||||||||||||||||||| ||| ||| | ||||| |
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| T |
27953709 |
aaatcatgttgcaaacttcttgaaacttatttaaatcatcacgtttgttatgatct--gatggtgaaattttatttgaagaattgaaagtcagtggagaa |
27953806 |
T |
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| Q |
120 |
gtttcaaaacttgaatcaaaat |
141 |
Q |
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| T |
27953807 |
gttttataagttgaatcaaaat |
27953828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 9435580 - 9435644
Alignment:
| Q |
76 |
ttgatggtgaaattttatttgaagaattaaaattcattagagaagtttcaaaacttgaatcaaaa |
140 |
Q |
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| T |
9435580 |
ttgatggtgaaattttatttaaagaattaaaagtcattagagaagttttaacggttgaatcaaaa |
9435644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 31603819 - 31603718
Alignment:
| Q |
20 |
aaatcatattgcaaacttcttgaaacatacttaaaacatgatgatttttatgatctttgatggtgaaattttatttgaagaattaaaattcattagagaa |
119 |
Q |
| |
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||||||| |||||||||| |||||||| || || |||| | |||||| |||||||| ||||||||||||| ||| ||||||||||| |||| ||||| |
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| T |
31603819 |
aaatcatgttgcaaactttttgaaacacacataggacataacgatttt-atgatctt-gatggtgaaatttcattctaagaattaaaagtcatcagagag |
31603722 |
T |
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| Q |
120 |
gttt |
123 |
Q |
| |
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|||| |
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| T |
31603721 |
gttt |
31603718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 37864681 - 37864788
Alignment:
| Q |
37 |
tcttgaaacatacttaaaacatgatgatttttatgatctttgatggtgaaattttatttgaagaattaaaattcattagagaagtttcaaaacttgaatc |
136 |
Q |
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||||||||| || |||||||||| | ||| ||||||||| ||||||||||| |||||||||||||||| ||||||||| ||| || | ||||||| |
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| T |
37864681 |
tcttgaaacttatttaaaacatggtaattcatatgatcttc-atggtgaaattcaatttgaagaattaaaagtcattagagtgattttaacaattgaatc |
37864779 |
T |
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| Q |
137 |
aaaatcaag |
145 |
Q |
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| T |
37864780 |
aaaatcaag |
37864788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 27501640 - 27501674
Alignment:
| Q |
75 |
tttgatggtgaaattttatttgaagaattaaaatt |
109 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
27501640 |
tttgatggtgaaattatatttgaagaattaaaatt |
27501674 |
T |
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