View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_136 (Length: 247)
Name: NF3229_low_136
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_136 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10767408 - 10767167
Alignment:
| Q |
1 |
tgcacttgcaaattctatagctaatggcattccaagtttagcacgtgcaagtcttacaactatttcatggatgtgtagctaccttcacttagttgaagat |
100 |
Q |
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| T |
10767408 |
tgcacttgcaaattctatagctaatggcattccaagtttagcacgtgcaagtcttacaactatttcatggatgtgtagctaccttcacttagttgaagat |
10767309 |
T |
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| Q |
101 |
acaaagttgccacaaatggctttctcaatcttaacaccacagttgctacaatcattgaattatgataatgatgttgaagaaagagttctatcttcatatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10767308 |
acaaagttgccacaaatggctttctcaatcttaacaccacagttactacaatcattgaattatgataatgatgttgaagaaagagttctatcttcatatt |
10767209 |
T |
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| Q |
201 |
cattgttgtatcttacaaaatattcaggtacatatattcttg |
242 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
10767208 |
cattgttgtatcttacaaaatattctggtacatattttcttg |
10767167 |
T |
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