View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_140 (Length: 245)
Name: NF3229_low_140
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_140 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 115923 - 115691
Alignment:
| Q |
15 |
aaaagtagcagttgctatcttcctgggccaaaggtcaaccccttctccgcctgttatagcggttttacggtcacgaatccatagaaccctcagaatgaat |
114 |
Q |
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| T |
115923 |
aaaagtagcagttgctatcttcctgggccaaaggtcaaccccttctccgcctgttatagcggttttacggtcacgaatccatagaaccctcagaatgaat |
115824 |
T |
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| Q |
115 |
tggatgacatatataaatgaaaaatacagagcaatcaggatactccataaatttcttctttgagatt-tgttgttgtta-tttggaagagatatggttgg |
212 |
Q |
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| T |
115823 |
tggatgacatatataaatgaaaaatacagagcaatcaggatactccataaatttcttctttgagattgtgttgttgttattttggaagagatatggttgg |
115724 |
T |
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| Q |
213 |
aagagagtttggatcttgcaacttcctacaacc |
245 |
Q |
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| T |
115723 |
aagagagtttggatcttgcaacttcctacaacc |
115691 |
T |
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