View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3229_low_143 (Length: 243)
Name: NF3229_low_143
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_143 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5352947 - 5352723
Alignment:
| Q |
1 |
ttaatgtttgtaattgaaagatatgttttggggaaaaaccattcaagccacaactacttagttgtaggatggttaaattggagaaatttgcaaaggaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5352947 |
ttaatgtttgtaattgaaagatatgttttggggaaaaaccattcaagccacaactacttagttgtaggatggttaaattggagaaatttgcaaaggaatc |
5352848 |
T |
|
| Q |
101 |
tggcagtatgcttgacaaattattgtggttcaattttagaaaatagagtgattgaagcttggatagtgaagaatcaataggtccagagagattgcatgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5352847 |
tggcagtatgcttgacaaattattgtggttcaattttagaaaatagagtgattgaagcttggatagtgaagaatcaaaaggtccagagagattgcatgat |
5352748 |
T |
|
| Q |
201 |
gacatgctcaaaacacgaagaccct |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5352747 |
gacatgctcaaaacacgaagaccct |
5352723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5425434 - 5425653
Alignment:
| Q |
1 |
ttaatgtttgtaattgaaagatatgttttggggaaaaaccattcaagccacaactacttagttgtaggatggttaaattggagaaatttgcaaaggaatc |
100 |
Q |
| |
|
||||||| || | ||| ||||||| ||||||| ||||||||||||||||||||||||| | ||||||| | |||||||||||||||||||||||||| || |
|
|
| T |
5425434 |
ttaatgtgtggatttggaagatatcttttgggaaaaaaccattcaagccacaactactgatttgtagggttgttaaattggagaaatttgcaaaggagtc |
5425533 |
T |
|
| Q |
101 |
tggcagtatgcttgacaaattattgtggttcaattttagaaaatagagtgattgaagcttggatagtgaagaatcaataggtccagagagattgcatgat |
200 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||||||||| | ||||||| |||||| | | ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5425534 |
tggcactatgctagacaaattattgtgactcaattttagaacagagagtgactgaagccttgctagcgaagaatcaataggtccagagagattgcatgat |
5425633 |
T |
|
| Q |
201 |
gacatgctcaaaacacgaag |
220 |
Q |
| |
|
|||||||| | ||||||||| |
|
|
| T |
5425634 |
gacatgcttagaacacgaag |
5425653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5500813 - 5500591
Alignment:
| Q |
1 |
ttaatgtttgtaattgaaagatatgttttggggaaaaaccattcaagccacaactacttagttgtaggatggttaaattggagaaatttgcaaaggaatc |
100 |
Q |
| |
|
|||||||||||| ||| ||||||| | || || || |||||| ||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| || |
|
|
| T |
5500813 |
ttaatgtttgtatttggaagatatctctttggaaagaaccatgcaagccacaactactgagttgtaggatggtcaaattggagaaatatgcaaaggagtc |
5500714 |
T |
|
| Q |
101 |
tggcagtatgcttgacaaattattgtggttcaattttagaaaatagagtgattgaagcttggatagtgaagaatcaataggtccagagagattgcatgat |
200 |
Q |
| |
|
||||| |||||| ||||| || |||||| |||||||||||| | |||| || |||||||| || |||||||||||| ||||||||||||||||||||| |
|
|
| T |
5500713 |
tggcactatgctcgacaatttgttgtggctcaattttagaacaaagagggactgaagcttacctaatgaagaatcaatgggtccagagagattgcatgat |
5500614 |
T |
|
| Q |
201 |
gacatgctcaaaacacgaagacc |
223 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
5500613 |
gacatgctcagaacacgaagacc |
5500591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 5391605 - 5391389
Alignment:
| Q |
9 |
tgtaattgaaagatatgttttggggaaaaaccattcaagccacaactacttagttgtaggatggttaaattggagaaatttgcaaaggaatctggcagta |
108 |
Q |
| |
|
|||| ||| ||||||| ||||||| || |||||| ||||||||||||||| || |||||||||||||||||||| |||||||||||| ||| |||| || |
|
|
| T |
5391605 |
tgtatttggaagatatcttttgggaaagaaccatgcaagccacaactactgagctgtaggatggttaaattggaaaaatttgcaaagaaattcggcacta |
5391506 |
T |
|
| Q |
109 |
tgcttgacaaattattgtggttcaattttagaaaatagagtgattgaagcttggatagtgaagaatcaataggtccagagagattgcatgatgacatgct |
208 |
Q |
| |
|
||| ||||| |||||||| |||||||||||| | |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5391505 |
tgcaggacaatttattgtgactcaattttagaagagagagtgattgaagcttaactagtgacgaatcaataggtccagagagattgcaggatgacatgct |
5391406 |
T |
|
| Q |
209 |
caaaacacgaagaccct |
225 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5391405 |
taaaacacgaagaccct |
5391389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5348114 - 5348330
Alignment:
| Q |
1 |
ttaatgtttgtaattgaaagatatgttttggggaaaaaccattcaagccacaactacttagttgtaggatggttaaattggagaaatttgcaaaggaatc |
100 |
Q |
| |
|
||||||| || | ||| ||||||| ||||||| | ||||||||||||||||||||||| | ||||| | | |||||||||||||| || |||||||| || |
|
|
| T |
5348114 |
ttaatgtgtggatttggaagatatcttttgggaataaaccattcaagccacaactactgatttgtaaggttgttaaattggagaatttcgcaaaggagtc |
5348213 |
T |
|
| Q |
101 |
tggcagtatgcttgacaaattattgtggttcaattttagaaaatagagtgattgaagcttggatagtgaagaatcaataggtccagagagattgcatgat |
200 |
Q |
| |
|
||||| |||||||||||| || |||| |||||||||||||| | ||||||| |||||| | |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5348214 |
tggcactatgcttgacaatttgttgttgttcaattttagaacagagagtgactgaagcctaactagtgaggaatcaataggtccagagagattgcatgat |
5348313 |
T |
|
| Q |
201 |
gacatgctcaaaacacg |
217 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
5348314 |
gacatgctcagaacacg |
5348330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5377293 - 5377069
Alignment:
| Q |
1 |
ttaatgtttgtaattgaaagatatgttttggggaaaaaccattcaagccacaactacttagttgtaggatggttaaattggagaaatttgcaaaggaatc |
100 |
Q |
| |
|
||||||| || | ||| ||||||| |||||| ||||||||||||||||||||||||| | || |||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
5377293 |
ttaatgtgtggatttggaagatatcctttgggaaaaaaccattcaagccacaactactgatttctaggattgttaaattggataaatttgcaaaggaatc |
5377194 |
T |
|
| Q |
101 |
tggcagtatgcttgacaaattattgtggttcaattttagaaaatagagtgattgaagcttggatagtgaagaatcaataggtccagagagattgcatgat |
200 |
Q |
| |
|
|||| | |||||||||| || |||| ||| ||| |||||| | ||||||| |||||||| | ||||||||||||||||| ||| ||||||||||| || |
|
|
| T |
5377193 |
aggcactttgcttgacaatttgttgttgtttaatcttagaacagagagtgactgaagcttagctagtgaagaatcaatagctcctgagagattgcacgac |
5377094 |
T |
|
| Q |
201 |
gacatgctcaaaacacgaagaccct |
225 |
Q |
| |
|
|||||| |||||||||||| ||||| |
|
|
| T |
5377093 |
gacatggtcaaaacacgaacaccct |
5377069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 5400055 - 5399866
Alignment:
| Q |
21 |
atatgttttggggaaaaaccattcaagccacaactacttagttgtaggatggttaaattggagaaatttgcaaaggaatctggcagtatgcttgacaaat |
120 |
Q |
| |
|
|||| ||||||| |||| ||||||||||||||||||| | ||||||| | |||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
5400055 |
atatcttttgggagaaaaacattcaagccacaactactgatttgtagggttgttaaattggagaaatttgcaaaggagtctggcactatgcttgacaaat |
5399956 |
T |
|
| Q |
121 |
tattgtggttcaattttagaaaatagagtgattgaagcttggatagtgaagaatcaataggtccagagagattgcatgatgacatgctca |
210 |
Q |
| |
|
||||||| |||||||||||| | ||||||| |||||| | | ||| ||| ||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
5399955 |
tattgtgactcaattttagaatagagagtgactgaagccttgctagcgaaaaatggataggtccagagagattgcttgatgacatgctca |
5399866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5411059 - 5410835
Alignment:
| Q |
1 |
ttaatgtttgtaattgaaagatatgttttggggaaaaaccattcaagccacaactacttagttgtaggatggttaaattggagaaatttgcaaaggaatc |
100 |
Q |
| |
|
||||||| |||| ||| ||||||| ||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| || |||| |
|
|
| T |
5411059 |
ttaatgtgtgtatttggaagatatcttttgggaaaaaacctttcaaggtacaactactgagttgtaggatggttaaattggagaaatttctgaaccaatc |
5410960 |
T |
|
| Q |
101 |
tggcagtatgcttgacaaattattgtggttcaattttagaaaatagagtgattgaagcttggatagtgaagaatcaataggtccagagagattgcatgat |
200 |
Q |
| |
|
||||| | | |||| ||||| ||| ||||||||| || | |||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5410959 |
tggcacagttgtaaacaatttattttggctcaattttacaattgaaagtgattgaagcttagctagtgaagaatcaataggtccagagagattgcatgat |
5410860 |
T |
|
| Q |
201 |
gacatgctcaaaacacgaagaccct |
225 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
5410859 |
gacatgctcaaaacacgaagcccct |
5410835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 27 - 225
Target Start/End: Complemental strand, 20327443 - 20327245
Alignment:
| Q |
27 |
tttggggaaaaaccattcaagccacaactacttagttgtaggatggttaaattggagaaatttgcaaaggaatctggcagtatgcttgacaaattattgt |
126 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | || |||||| ||||||||||||||||||||||||||||| |||| | |||||||||| || |||| |
|
|
| T |
20327443 |
tttgggaaaaaaccattcaagccacaactactgatttctaggattgttaaattggagaaatttgcaaaggaatcaggcactttgcttgacaatttgttgt |
20327344 |
T |
|
| Q |
127 |
ggttcaattttagaaaatagagtgattgaagcttggatagtgaagaatcaataggtccagagagattgcatgatgacatgctcaaaacacgaagaccct |
225 |
Q |
| |
|
||| ||| |||||| | ||||||| |||||||| | ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||| |
|
|
| T |
20327343 |
tgtttaatcttagaacagagagtgactgaagcttagctagtgaagaatcaataggtcctgagagattgcacgacgacatgctcaaaacacgaacaccct |
20327245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University