View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_144 (Length: 243)
Name: NF3229_low_144
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_144 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 14646463 - 14646307
Alignment:
| Q |
18 |
attgatattgatcatgtatagattatgatgttgatcttgtttttcttttcaaattggctttgtctgttaattacatgttgaaaaatctgttcaactagtt |
117 |
Q |
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| T |
14646463 |
attgatattgatcatgtatagattatgatgttgatcttgttttgcttttcaaattggctttgtctgctagttacatgttgaaaaatctgttcaactagtt |
14646364 |
T |
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| Q |
118 |
tcaattaaaaatacctaatcgataacactagacaccatacaatcacattaaagtctcttca |
178 |
Q |
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| T |
14646363 |
tcaattaaaaatacctaatcgataacactagacaccata----cacattaaagtctcttca |
14646307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 14651081 - 14650969
Alignment:
| Q |
28 |
atcatgtatagattatgatgttgatcttgtttttcttttcaaattggctttgtctgttaattacatgttgaaaaatctgttcaactagtttcaattaaaa |
127 |
Q |
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| T |
14651081 |
atcatgtatagattatgatgttcatcttgttttgcttttcgaattggctatgtctgctaattaattgttg-aaaatttgttcaactagtttcaattgaaa |
14650983 |
T |
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| Q |
128 |
atacctaatcgata |
141 |
Q |
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| T |
14650982 |
atacctaattgata |
14650969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 14637976 - 14637884
Alignment:
| Q |
85 |
taattacatgttgaaaaatctgttcaactagtttcaattaaaaatacctaatcgataacactagacac-catacaatcacattaaagtctctt |
176 |
Q |
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| T |
14637976 |
taattaaatgttgtaaaatctaatcatctcgtctcaattaaaaatacctaatccataacaatagatactaatacaatcacattaaagtctctt |
14637884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 14631337 - 14631254
Alignment:
| Q |
92 |
atgttgaaaaatctgttcaactagtttcaattaaaaatacctaatcgataacactagacac-catacaatcacattaaagtctc |
174 |
Q |
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| T |
14631337 |
atgttgtaaaatctaatcatctcgtctcaattaaaaatacctaatccataacaatagatactaatacaatcacatgaaagtctc |
14631254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 14641458 - 14641401
Alignment:
| Q |
120 |
aattaaaaatacctaatcgataacactagacacc-atacaatcacattaaagtctctt |
176 |
Q |
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| T |
14641458 |
aattgaaaatacctaatgcataacactagataccgatacaatcacagtaaagtctctt |
14641401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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