View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_146 (Length: 242)

Name: NF3229_low_146

Description: NF3229

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3229_low_146

[»] chr7 (5 HSPs)

[»] chr4 (1 HSPs)

Alignment Details

Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 5)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 213; E-Value: 1e-117

Query Start/End: Original strand, 14 - 242

Target Start/End: Original strand, 17173498 - 17173726

Alignment:

Q	14	catcacaaaatacaagttaaataataacataaaccaaacataaatccatgataactttattactaataaacccaacccatcttaagggtttttattgatc	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	17173498	catcacaaaatacaaattaaataataacataaaccaaacataaatccatgataactttattaccaataaacccaacccatcttaagggtttttattgatc	17173597	T

Q	114	atctccatgagatcaatttcttgattaagaggaacctcaagaaaaaactcaattccatttgatccaaactcataattcattgtggtaccagatccacttg	213	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	17173598	atctccatgagatcaatttcttgattaagaggaacctcaggaaaaaactcaattccatatgatccaaactcataattcattgtggtaccagatccacttg	17173697	T

Q	214	ccattccatcatcaccattgaacatcatt	242	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	17173698	ccattccatcatcaccattgaacatcatt	17173726	T

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Target: chr7; HSP #2

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 149 - 242

Target Start/End: Original strand, 13467479 - 13467569

Alignment:

Q	149	ctcaagaaaaaactcaattccatttgatccaaactcataattcattgtggtaccagatccacttgccattccatcatcaccattgaacatcatt	242	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|
T	13467479	ctcaggaaaaaactccattccatacgatccgaacccataattcattgtg---ccatacccacttgtcattccatcatcaccgttgagcatcatt	13467569	T

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Target: chr7; HSP #3

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 94 - 182

Target Start/End: Complemental strand, 13644154 - 13644066

Alignment:

Q	94	cttaagggtttttattgatcatctccatgagatcaatttcttgattaagaggaacctcaagaaaaaactcaattccatttgatccaaac	182	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13644154	cttaagggtttctatatatcttctccatgaggtcaatttcctgctttttaggaatttcaggaaaaaactccattccatttgatccaaac	13644066	T

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Target: chr7; HSP #4

Raw Score: 32; E-Value: 0.000000005

Query Start/End: Original strand, 207 - 242

Target Start/End: Complemental strand, 13644065 - 13644030

Alignment:

Q	207	ccacttgccattccatcatcaccattgaacatcatt	242	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13644065	ccacttgccattccatcatcatcattgaacatcatt	13644030	T

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Target: chr7; HSP #5

Raw Score: 32; E-Value: 0.000000005

Query Start/End: Original strand, 207 - 242

Target Start/End: Complemental strand, 13706514 - 13706479

Alignment:

Q	207	ccacttgccattccatcatcaccattgaacatcatt	242	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13706514	ccacttgccattccatcatcatcattgaacatcatt	13706479	T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 70; E-Value: 1e-31

Query Start/End: Original strand, 57 - 242

Target Start/End: Original strand, 34653310 - 34653495

Alignment:

Q	57	atccatgataactttattactaataaacccaacccatcttaagggtttttattgatcatctccatgagatcaatttcttgattaagaggaacctcaagaa	156	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\| \|\| \| \|\|\|\|\|\|\|\| \|\|\|
T	34653310	atccatgaaaacttcattagtcataaaccatactcgccttaaggatttctatagatcatacccatgaaatcaatttcctgcttcattggaacctcgggaa	34653409	T

Q	157	aaaactcaattccatttgatccaaactcataattcattgtggtaccagatccacttgccattccatcatcaccattgaacatcatt	242	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34653410	aaaactccattccatatgttccaaaatcataactcgttgtggtgccagatccacttgccattccatcatcaccattgaacatcatt	34653495	T

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