View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_147 (Length: 241)
Name: NF3229_low_147
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_147 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 30074807 - 30074584
Alignment:
| Q |
18 |
gaatcctcactacctgccacttcaagcttatttggattttgcactttattgccagacattgtttcttgtttctctgtaaaagttgatgcaaccttcaagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30074807 |
gaatcctcactacctgccacttcaagcttatttgtattttgcactttattgccagacattgtttcctgtttctctgtaaaagttgatgcaaccttcaagc |
30074708 |
T |
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| Q |
118 |
tcttcatcatcatttttatggtaaggtatttgacctcggcttcaaccttttgcagaaaaaggctctcaagctcagactccagctctttacatttttcacc |
217 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30074707 |
tcttcatcatatttttgatggtaaggtatttgacctcggcttcaaccttttgcagaaaaaggctctcaagctcagactccagctctttacatttttcacc |
30074608 |
T |
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| Q |
218 |
tattgtgctagtagattcttcctt |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
30074607 |
tattgtgctagtagattcttcctt |
30074584 |
T |
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