View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_156 (Length: 237)
Name: NF3229_low_156
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_156 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 43239693 - 43239905
Alignment:
| Q |
18 |
atgacctagatcatgcaacttatgcgttgttgagacataaaaaattgagatctatataaccaaaatcatgtgactacatnnnnnnntagtgatctatata |
117 |
Q |
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| T |
43239693 |
atgacctagatcatgcaacttatgcgttgttgcgacataaaaaattgagaactatataaccaaaatcatgtgactacataaaaaaatagtgatctatata |
43239792 |
T |
|
| Q |
118 |
aaccaaaatcacgtgtttgatgtgcatagacatacaaaattaagatttcgtggcgagattaagatgaaattgtttcctaaaaacacgcatttgtctttaa |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43239793 |
aaccaaaatcatgtgtttgatgtgcatagacatacaaaattaagatttcgtggcgagattaagatgaaattgtttcctaaaaacacgcctttgtctttaa |
43239892 |
T |
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| Q |
218 |
actaattaacttg |
230 |
Q |
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||||||||||||| |
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| T |
43239893 |
actaattaacttg |
43239905 |
T |
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