View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_159 (Length: 237)
Name: NF3229_low_159
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_159 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 52092321 - 52092128
Alignment:
| Q |
1 |
cagcaacaacaacacaacaatttcaaacctttgacataacctcattnnnnnnnnnnnnnncataaatttttgaacttgtagttgaacccataaatccata |
100 |
Q |
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| T |
52092321 |
cagcaacaacaacacaacaatttcaaacctttgacataacctcattaaaaaaaaatc---cataaattttagaacttgtagttgaacccataaatccata |
52092225 |
T |
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| Q |
101 |
aaatttctaaaaataaaaacttagaacttgtgaaacttgaaattacatattgcaattccaaaaccccaaatttgcaaaacatagtagttgaacccaa |
197 |
Q |
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| T |
52092224 |
aaatttctaaaaataaaaacttagaacttgtgaaacttgaaattacagattgcaattccaaaaccccaaatttgcaaaacttagtagttgaacccaa |
52092128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 51569556 - 51569360
Alignment:
| Q |
1 |
cagcaacaacaacacaacaatttcaaacctttgacataacctcattnnnnnnnnnnnnnncataaatttttgaacttgtagttgaacccataaatccata |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
51569556 |
cagcagcaacaacacaacaatttcaaacctttgacataacctcattaaaaaaaaaaatc-cataaattttagaacttgtagttgaacccataaatccata |
51569458 |
T |
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| Q |
101 |
aaatttctaaaaa-taaaaacttagaacttgtgaaacttgaaattacatattgcaattccaaaaccccaaatttgcaaaacatagtagttgaacccaa |
197 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
51569457 |
aaatttctaaaaaataaaaacttagaacttgtgaaacatgaaattacagattgcaattccaaaacccgaaatttgcaaaacttagtagttgaacccaa |
51569360 |
T |
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