View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_16 (Length: 457)

Name: NF3229_low_16
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_16
NF3229_low_16
[»] chr1 (4 HSPs)
chr1 (306-437)||(52140752-52140883)
chr1 (143-204)||(6923510-6923571)
chr1 (257-300)||(52140901-52140944)
chr1 (373-405)||(52131249-52131281)
[»] chr8 (3 HSPs)
chr8 (329-431)||(17524854-17524955)
chr8 (201-325)||(17524437-17524571)
chr8 (166-203)||(16367881-16367918)
[»] chr4 (2 HSPs)
chr4 (1-187)||(37615638-37615825)
chr4 (166-202)||(17558824-17558860)
[»] chr6 (1 HSPs)
chr6 (40-126)||(22083651-22083733)
[»] chr3 (2 HSPs)
chr3 (165-206)||(52130754-52130795)
chr3 (166-202)||(5561552-5561588)
[»] chr7 (1 HSPs)
chr7 (165-201)||(24763319-24763355)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 306 - 437
Target Start/End: Complemental strand, 52140883 - 52140752
Alignment:
Q  306 gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaatac 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52140883 gtggcaactgtttgtacataaatacatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaatac 52140784  T
Q  406 caaacttacttttacaattttctatacatctt 437  Q
    ||| ||||||||||||||||||||||||||||    
T  52140783 caagcttacttttacaattttctatacatctt 52140752  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 6923510 - 6923571
Alignment:
Q  143 ttcaactaatatttttagcaaattatgacccatgcggcagcacgggtagacaatctagttta 204  Q
    ||||||||||||||||||| |  |||||||| ||| || |||||||||||| ||||||||||    
T  6923510 ttcaactaatatttttagctatatatgacccgtgctgctgcacgggtagacgatctagttta 6923571  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 52140944 - 52140901
Alignment:
Q  257 gttggccaattgcagaggaggataagagaactcaaaatcaagct 300  Q
    ||||||||||||||||||||  |||||||||||||||| |||||    
T  52140944 gttggccaattgcagaggagattaagagaactcaaaattaagct 52140901  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Complemental strand, 52131281 - 52131249
Alignment:
Q  373 cattccaatttccaatctctaagtaataaatac 405  Q
    |||||||||||||||||||| ||||||||||||    
T  52131281 cattccaatttccaatctcttagtaataaatac 52131249  T

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Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 329 - 431
Target Start/End: Original strand, 17524854 - 17524955
Alignment:
Q  329 acatcgaattaaattagcaataccgtggccactggtacttcatacattccaatttccaatctctaagtaataaataccaaacttacttttacaattttct 428  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  17524854 acatcgaattaaattagcaataccgtggccagtaggacttcatacattccaatttccaatctctaagtaataaatacc-aagttacttttacaattttct 17524952  T
Q  429 ata 431  Q
    |||    
T  17524953 ata 17524955  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 325
Target Start/End: Original strand, 17524437 - 17524571
Alignment:
Q  201 tttaacaaatttgtgtgaaccatcgcggtattctaccaagtttctcttgctcaaatg-ttggccaattgcagaggaggataagagaactcaaaatcaag- 298  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||  |||||||||||||||| |||     
T  17524437 tttaagaaatttgtgtgaaacatcgcggtactctaccaagtttctcttgctccaatgtttggccaattgcagaggagattaagagaactcaaaattaagc 17524536  T
Q  299 --------ctcgtaagtggcaactgtttgtacata 325  Q
            |||||||||||||||||||||||||||    
T  17524537 tttaattactcgtaagtggcaactgtttgtacata 17524571  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 16367881 - 16367918
Alignment:
Q  166 tatgacccatgcggcagcacgggtagacaatctagttt 203  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  16367881 tatgacccgtgcggcagcacgggtagacgatctagttt 16367918  T

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Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 37615825 - 37615638
Alignment:
Q  1 attatggttatgtatgtctatcatatct--ataattttttaacctatgtaagatgatcatacgtcaattaattaatcgcatttagtcagaacaatttggt 98  Q
    ||||||| ||||||||||| ||||||||    | ||||||||||||||||||| |||| ||||||    |||||||||||||  ||||||||||||  ||    
T  37615825 attatggctatgtatgtctctcatatcttcgaatttttttaacctatgtaagacgatcgtacgtc----aattaatcgcattacgtcagaacaattcagt 37615730  T
Q  99 acattgagtaactatatattaattttatcggatatat---gattgctttcaactaatatttttagcaaattatgacccatgcggcagcacgg 187  Q
    | |||||||||||||||||||||||||| ||||||||    || |||||||||||||| |||||| |||||||||||| ||| |||||||||    
T  37615729 atattgagtaactatatattaattttattggatatataacaatggctttcaactaatagttttagtaaattatgacccgtgcagcagcacgg 37615638  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 17558860 - 17558824
Alignment:
Q  166 tatgacccatgcggcagcacgggtagacaatctagtt 202  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  17558860 tatgacccgtgcggcagcacgggtagacgatctagtt 17558824  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 22083651 - 22083733
Alignment:
Q  40 acctatgtaagatgatcatacgtcaattaattaatcgcatttagtcagaacaatttggtacattgagtaactatatattaattttat 126  Q
    |||||||||||| |||||||||| ||||    |||||||||  ||||||||||||  ||||||||||||||||||| ||||||||||    
T  22083651 acctatgtaagacgatcatacgtgaatt----aatcgcattacgtcagaacaattcagtacattgagtaactatatcttaattttat 22083733  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 52130754 - 52130795
Alignment:
Q  165 ttatgacccatgcggcagcacgggtagacaatctagtttaac 206  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  52130754 ttatgacccgtgcggcagcacgggtagacaatctagtctaac 52130795  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 5561588 - 5561552
Alignment:
Q  166 tatgacccatgcggcagcacgggtagacaatctagtt 202  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  5561588 tatgacccgtgcggcagcacgggtagacgatctagtt 5561552  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 24763319 - 24763355
Alignment:
Q  165 ttatgacccatgcggcagcacgggtagacaatctagt 201  Q
    ||||||||| |||||||||||||||||||||||||||    
T  24763319 ttatgacccgtgcggcagcacgggtagacaatctagt 24763355  T

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