View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_167 (Length: 236)

Name: NF3229_low_167
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_167
NF3229_low_167
[»] chr7 (2 HSPs)
chr7 (14-236)||(28430134-28430356)
chr7 (29-89)||(48158825-48158885)
[»] chr8 (3 HSPs)
chr8 (35-84)||(18355926-18355975)
chr8 (32-91)||(6027138-6027197)
chr8 (32-82)||(5859163-5859213)
[»] chr1 (4 HSPs)
chr1 (26-82)||(14515381-14515438)
chr1 (32-84)||(47322002-47322054)
chr1 (37-89)||(1416293-1416345)
chr1 (32-100)||(11049205-11049272)
[»] chr3 (5 HSPs)
chr3 (73-153)||(7298327-7298406)
chr3 (32-84)||(54596755-54596807)
chr3 (32-82)||(5046174-5046224)
chr3 (32-73)||(45319843-45319884)
chr3 (46-86)||(35730171-35730211)
[»] chr6 (4 HSPs)
chr6 (26-84)||(19601535-19601593)
chr6 (26-79)||(2002566-2002619)
chr6 (26-78)||(2008440-2008492)
chr6 (26-82)||(26280536-26280592)
[»] chr5 (2 HSPs)
chr5 (32-97)||(3043087-3043152)
chr5 (32-97)||(10859904-10859969)
[»] chr4 (1 HSPs)
chr4 (26-62)||(41370311-41370347)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 28430356 - 28430134
Alignment:
Q  14 caggtggaatagttttgaaggtgtaaaattgattttgatatgtttaattgttttcgagtagaattgattctaactttaagctaggatgcagagtttttga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  28430356 caggtggaatagttttgaaggtgtaaaattgattttgatatgtttaattgtttttgagtagaattgattctaactttaagctaggatgcagagtatttga 28430257  T
Q  114 gtctcagcgtgatttttacactgaagtttattgttgaacacttgaacccacttttacttaaagttttcaccctagaaccaatgtgatcaaattttgttat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||| |||||||||    
T  28430256 gtctcagcgtgatttttacactgaagtttattgttgaacacttgaacccacttttacttaaagttttcactgtagaaccaacgtgatcaatttttgttat 28430157  T
Q  214 gtgcagaaccaaacatgcactcc 236  Q
    |||||||||||||||||||||||    
T  28430156 gtgcagaaccaaacatgcactcc 28430134  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 48158825 - 48158885
Alignment:
Q  29 tgaaggtgtaaaattgattttgatatgtttaattgttttcgagtagaattgattctaactt 89  Q
    |||||| |||||||||||||||| ||||||  ||| | ||||||| |||||||| ||||||    
T  48158825 tgaaggcgtaaaattgattttgacatgtttggttgctctcgagtaaaattgattataactt 48158885  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 18355975 - 18355926
Alignment:
Q  35 tgtaaaattgattttgatatgtttaattgttttcgagtagaattgattct 84  Q
    |||| |||||||||||| |||| | |||||||||||||||||||||||||    
T  18355975 tgtagaattgattttgacatgtatgattgttttcgagtagaattgattct 18355926  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 6027197 - 6027138
Alignment:
Q  32 aggtgtaaaattgattttgatatgtttaattgttttcgagtagaattgattctaacttta 91  Q
    |||||||||||||||| |||||| |||  || || | |||||||||||||||||||||||    
T  6027197 aggtgtaaaattgattatgatatatttcgttattgttgagtagaattgattctaacttta 6027138  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 5859213 - 5859163
Alignment:
Q  32 aggtgtaaaattgattttgatatgtttaattgttttcgagtagaattgatt 82  Q
    |||||||||||||||| ||||||||||| ||| |||| |||| ||||||||    
T  5859213 aggtgtaaaattgattctgatatgtttagttgctttcaagtaaaattgatt 5859163  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 14515438 - 14515381
Alignment:
Q  26 ttttgaaggtgtaaaattgatttt-gatatgtttaattgttttcgagtagaattgatt 82  Q
    |||| ||||||||||||||||||| ||||||||| |||| | ||||||||||||||||    
T  14515438 ttttaaaggtgtaaaattgatttttgatatgtttgattgctctcgagtagaattgatt 14515381  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 47322054 - 47322002
Alignment:
Q  32 aggtgtaaaattgattttgatatgtttaattgttttcgagtagaattgattct 84  Q
    ||||||| |||||||||||| ||||||  ||||| ||||||||||||||||||    
T  47322054 aggtgtagaattgattttgacatgttttgttgttgtcgagtagaattgattct 47322002  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 1416345 - 1416293
Alignment:
Q  37 taaaattgattttgatatgtttaattgttttcgagtagaattgattctaactt 89  Q
    |||| |||||||||| |||||| | |||||| | |||||||||||||||||||    
T  1416345 taaatttgattttgacatgtttgaatgtttttgggtagaattgattctaactt 1416293  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 11049205 - 11049272
Alignment:
Q  32 aggtgtaaaattgattttgatatgtttaattgttttcgagtagaattgattctaactttaagctaggat 100  Q
    ||||||| ||||||||  || |||||| |||| ||||||||||||| |||||| |||| ||||||||||    
T  11049205 aggtgtagaattgattcagacatgtttcattgctttcgagtagaatcgattct-acttgaagctaggat 11049272  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 7298406 - 7298327
Alignment:
Q  73 agaattgattctaactttaagctaggatgcagagtttttgagtctcagcgtgatttttacactgaagtttattgttgaaca 153  Q
    ||||| ||||||||||| ||||||||||    ||||||||||||| | ||||||||||| |||||| ||||||||| ||||    
T  7298406 agaatcgattctaacttgaagctaggatttgtagtttttgagtctaatcgtgattttta-actgaaatttattgttcaaca 7298327  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 54596755 - 54596807
Alignment:
Q  32 aggtgtaaaattgattttgatatgtttaattgttttcgagtagaattgattct 84  Q
    |||||||||||||||| ||| ||||||  |||||||| |||||||||||||||    
T  54596755 aggtgtaaaattgattatgacatgtttggttgttttcaagtagaattgattct 54596807  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 5046224 - 5046174
Alignment:
Q  32 aggtgtaaaattgattttgatatgtttaattgttttcgagtagaattgatt 82  Q
    ||||||||||||||||||||||||||| |||  ||| ||||||| ||||||    
T  5046224 aggtgtaaaattgattttgatatgtttgatttctttagagtagagttgatt 5046174  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 45319843 - 45319884
Alignment:
Q  32 aggtgtaaaattgattttgatatgtttaattgttttcgagta 73  Q
    |||||||||||||||||||  ||||||||||||| |||||||    
T  45319843 aggtgtaaaattgattttggcatgtttaattgttctcgagta 45319884  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 35730211 - 35730171
Alignment:
Q  46 ttttgatatgtttaattgttttcgagtagaattgattctaa 86  Q
    |||||| ||||||||||| ||||||||| ||||||||||||    
T  35730211 ttttgacatgtttaattgatttcgagtaaaattgattctaa 35730171  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 19601593 - 19601535
Alignment:
Q  26 ttttgaaggtgtaaaattgattttgatatgtttaattgttttcgagtagaattgattct 84  Q
    ||||||||||||| |||||||| || |||| ||| ||| |||||| |||||||||||||    
T  19601593 ttttgaaggtgtacaattgattctggtatgcttagttgctttcgattagaattgattct 19601535  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 2002619 - 2002566
Alignment:
Q  26 ttttgaaggtgtaaaattgattttgatatgtttaattgttttcgagtagaattg 79  Q
    ||||| ||| ||| |||||||||||| ||||||  |||||||||||||||||||    
T  2002619 ttttggaggcgtagaattgattttgacatgtttggttgttttcgagtagaattg 2002566  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 2008492 - 2008440
Alignment:
Q  26 ttttgaaggtgtaaaattgattttgatatgtttaattgttttcgagtagaatt 78  Q
    ||||| ||||||| ||||| || ||| |||||| |||||||||||||||||||    
T  2008492 ttttggaggtgtagaattgtttctgacatgtttgattgttttcgagtagaatt 2008440  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 26280536 - 26280592
Alignment:
Q  26 ttttgaaggtgtaaaattgattttgatatgtttaattgttttcgagtagaattgatt 82  Q
    |||| |||||||| |||||||||||| |||||| ||||||||   ||||||||||||    
T  26280536 ttttaaaggtgtagaattgattttgacatgtttgattgttttttggtagaattgatt 26280592  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 3043152 - 3043087
Alignment:
Q  32 aggtgtaaaattgattttgatatgtttaattgttttcgagtagaattgattctaactttaagctag 97  Q
    ||||||| |||||||||||| ||||||| ||| ||  || |||||||||||||||| | |||||||    
T  3043152 aggtgtagaattgattttgacatgtttagttgcttaagaatagaattgattctaacatgaagctag 3043087  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 10859969 - 10859904
Alignment:
Q  32 aggtgtaaaattgattttgatatgtttaattgttttcgagtagaattgattctaactttaagctag 97  Q
    ||||||| || |||||||||  ||||| | |||| ||| ||||||||||||||||||| |||||||    
T  10859969 aggtgtagaaatgattttgacctgtttgaatgttctcgggtagaattgattctaacttgaagctag 10859904  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 41370347 - 41370311
Alignment:
Q  26 ttttgaaggtgtaaaattgattttgatatgtttaatt 62  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  41370347 ttttaaaggtgtaaaattgattttgacatgtttaatt 41370311  T

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