View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_168 (Length: 235)
Name: NF3229_low_168
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_168 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 4823591 - 4823741
Alignment:
| Q |
1 |
acaaattgaatgaacaatgaaactaatgttttaagcttcaattgaatgctgattttctcctattatcatatatcttctgaaaatcacggtgatagagccg |
100 |
Q |
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| T |
4823591 |
acaaattgaatgaacaatgaaactaatgttttaagcttcaattgaatgctgattttctcctattatcatatatcttctgaaaatcacggtgatagagccg |
4823690 |
T |
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| Q |
101 |
caattgcagtcgcaaaatcctaaactatcttaatgttgcgatccagatcgt |
151 |
Q |
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| T |
4823691 |
caattgcagtcgcaaaatcctaaactatcttaatgttgcgatccagatcgt |
4823741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 4817354 - 4817491
Alignment:
| Q |
7 |
tgaatgaacaatgaaactaatgttttaagcttcaattgaatgctgattttctcctattatcatatatcttctgaaaatcacggtgatagagccgcaattg |
106 |
Q |
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| T |
4817354 |
tgaatgaacaatgaaactaatgttttaagcttcgactgaatgctggttttctcctattatcatatatcttctgaaaatcacggtgatacagccgcaatcg |
4817453 |
T |
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| Q |
107 |
cagtcgcaaaatcctaaactatcttaatgttgcgatccagatcg |
150 |
Q |
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| T |
4817454 |
cggtcacaa------aaataatcttaatgttgcgatccagatcg |
4817491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 4823892 - 4823963
Alignment:
| Q |
150 |
gtacctaagttttatactcttttaaaagcatgatatgatagggatgcagtttccatcaggcaagaactttat |
221 |
Q |
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| T |
4823892 |
gtacctaagttttatactcttttaaaagcatgaaatgatagggatgcagtttccatcaggcaagaactttat |
4823963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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