View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_169 (Length: 235)

Name: NF3229_low_169
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_169
NF3229_low_169
[»] chr8 (6 HSPs)
chr8 (1-222)||(44902683-44902907)
chr8 (108-184)||(27804980-27805056)
chr8 (108-185)||(3774271-3774348)
chr8 (108-170)||(4267814-4267876)
chr8 (108-170)||(11863979-11864041)
chr8 (2-44)||(34191363-34191405)
[»] chr7 (2 HSPs)
chr7 (108-170)||(8937360-8937422)
chr7 (40-81)||(8080894-8080935)
[»] chr1 (5 HSPs)
chr1 (117-184)||(11619591-11619658)
chr1 (40-169)||(24615158-24615292)
chr1 (40-89)||(35671784-35671833)
chr1 (108-169)||(41198094-41198155)
chr1 (117-169)||(28656035-28656087)
[»] chr5 (4 HSPs)
chr5 (108-170)||(40044620-40044682)
chr5 (108-184)||(27111114-27111190)
chr5 (108-170)||(42715745-42715807)
chr5 (40-81)||(41061614-41061655)
[»] chr4 (7 HSPs)
chr4 (108-170)||(34277408-34277470)
chr4 (117-170)||(3757415-3757468)
chr4 (110-173)||(31567735-31567798)
chr4 (117-170)||(670372-670425)
chr4 (117-170)||(42430460-42430513)
chr4 (40-76)||(7700654-7700690)
chr4 (117-169)||(23695515-23695567)
[»] chr2 (3 HSPs)
chr2 (117-170)||(21351895-21351948)
chr2 (40-87)||(22596723-22596770)
chr2 (40-85)||(21351990-21352035)
[»] chr3 (2 HSPs)
chr3 (118-170)||(29283439-29283491)
chr3 (40-89)||(19636232-19636281)
[»] chr6 (2 HSPs)
chr6 (117-170)||(10483983-10484036)
chr6 (118-170)||(30396023-30396075)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44902907 - 44902683
Alignment:
Q  1 actattattttaccgtgtttatgtaatagtaatttgaataaaaatcgatccaaatgaaacagcatatattt---ggatcagttctgttcggannnnnnna 97  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||| ||       |    
T  44902907 actattattttaccgtgtttctgtaatagtaatttgaataaaaatcgatccaaatgaaacagcatatatttattggataagttctgttcagattttttta 44902808  T
Q  98 gaatagacatccgaatcgaatgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaaccacatcgtaaacaccgaacaaacataaa 197  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||||||    
T  44902807 gaatagacatcctaatcgaatgtgattttaattttgaatcgaatgatattttgcttcaaaatcgatccaaaccacaccgtaaataccgaacaaacataaa 44902708  T
Q  198 taagttgtttatttacattgaatgt 222  Q
    |||||| |||||||||||| |||||    
T  44902707 taagttatttatttacattaaatgt 44902683  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 27805056 - 27804980
Alignment:
Q  108 ccgaatcgaatgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaaccacatcgtaaacacc 184  Q
    ||||| || |||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||||||    
T  27805056 ccgaaccgcatgtgatttttattttggatcggatgacattttacttcaaaaccgatccaagccacatcgtgaacacc 27804980  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 3774271 - 3774348
Alignment:
Q  108 ccgaatcgaatgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaaccacatcgtaaacaccg 185  Q
    |||||| | |||||||||| ||||||||||   ||||||||| | ||||||||||||||||||||| ||| |||||||    
T  3774271 ccgaattgcatgtgatttttattttggatcagttgacattttacctcaaaaccgatccaaaccacaccgtgaacaccg 3774348  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 4267814 - 4267876
Alignment:
Q  108 ccgaatcgaatgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaacc 170  Q
    ||||| || |||||||||| |||||||||||  ||||||||| | |||||| |||||||||||    
T  4267814 ccgaaccgcatgtgatttttattttggatcggttgacattttacctcaaaatcgatccaaacc 4267876  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 11863979 - 11864041
Alignment:
Q  108 ccgaatcgaatgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaacc 170  Q
    ||||| || |||| ||||| |||||||||||| ||||||||| | |||||||| |||||||||    
T  11863979 ccgaaccgcatgtaatttttattttggatcgattgacattttacctcaaaaccaatccaaacc 11864041  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 34191363 - 34191405
Alignment:
Q  2 ctattattttaccgtgtttatgtaatagtaatttgaataaaaa 44  Q
    ||||||||||||||||||||||||||| |||| | ||||||||    
T  34191363 ctattattttaccgtgtttatgtaatattaatcttaataaaaa 34191405  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 8937422 - 8937360
Alignment:
Q  108 ccgaatcgaatgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaacc 170  Q
    ||||| ||||||||||||| ||||||||||| |||||||||| | ||||||| ||||||||||    
T  8937422 ccgaaccgaatgtgatttttattttggatcggatgacattttacctcaaaactgatccaaacc 8937360  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 8080894 - 8080935
Alignment:
Q  40 aaaaatcgatccaaatgaaacagcatatatttggatcagttc 81  Q
    ||||| |||||||||| |||| ||||||||||||||||||||    
T  8080894 aaaaaccgatccaaattaaaccgcatatatttggatcagttc 8080935  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 11619658 - 11619591
Alignment:
Q  117 atgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaaccacatcgtaaacacc 184  Q
    |||||||||| ||||||||||| |||||||| ||| ||||||| |||||||||| || || |||||||    
T  11619658 atgtgatttttattttggatcggatgacattctgcctcaaaactgatccaaaccgcaccgcaaacacc 11619591  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 24615158 - 24615292
Alignment:
Q  40 aaaaatcgatccaaatgaaacagcatatatttggatcagttctgttcggannnnnnnagaatagacat-----ccgaatcgaatgtgattttaattttgg 134  Q
    |||||||||||||||| |||| ||||||||||||||| | || |||||||       ||||||  |||     ||||| || |||||||||| ||||| |    
T  24615158 aaaaatcgatccaaattaaaccgcatatatttggatcggctcggttcggatttttttagaatactcatccaaaccgaaccgcatgtgatttttattttag 24615257  T
Q  135 atcgaatgacattttgcttcaaaaccgatccaaac 169  Q
    ||||  ||||||||| | |||||||||||||||||    
T  24615258 atcggttgacattttacctcaaaaccgatccaaac 24615292  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 35671833 - 35671784
Alignment:
Q  40 aaaaatcgatccaaatgaaacagcatatatttggatcagttctgttcgga 89  Q
    ||||| |||||||||| |||| ||||||||||||||| |||| |||||||    
T  35671833 aaaaaccgatccaaattaaactgcatatatttggatcggttcggttcgga 35671784  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 41198155 - 41198094
Alignment:
Q  108 ccgaatcgaatgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaac 169  Q
    ||||| || |||||||||| |||||||||||  ||||||||| | |||||| ||||||||||    
T  41198155 ccgaaccgcatgtgatttttattttggatcggttgacattttacctcaaaatcgatccaaac 41198094  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 28656035 - 28656087
Alignment:
Q  117 atgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaac 169  Q
    |||||||||| |||||| |||| |||||||||||  ||||||||||| |||||    
T  28656035 atgtgatttttattttgaatcggatgacattttgtctcaaaaccgattcaaac 28656087  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 40044620 - 40044682
Alignment:
Q  108 ccgaatcgaatgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaacc 170  Q
    ||||| || |||||||||| ||||||||||| |||||||||||| |||||| |||| ||||||    
T  40044620 ccgaaccgcatgtgatttttattttggatcggatgacattttgcctcaaaatcgattcaaacc 40044682  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 27111114 - 27111190
Alignment:
Q  108 ccgaatcgaatgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaaccacatcgtaaacacc 184  Q
    ||||| || |||||||||| |||||||||||  ||||||||| | ||||||| |||||||||| || || |||||||    
T  27111114 ccgaaccgtatgtgatttttattttggatcggttgacattttacctcaaaactgatccaaaccgcaccgcaaacacc 27111190  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 42715807 - 42715745
Alignment:
Q  108 ccgaatcgaatgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaacc 170  Q
    ||||| || |||||| ||| ||||| |||||  ||||||||||| ||||||||||||||||||    
T  42715807 ccgaaccgcatgtgaattttattttagatcggttgacattttgcctcaaaaccgatccaaacc 42715745  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 41061614 - 41061655
Alignment:
Q  40 aaaaatcgatccaaatgaaacagcatatatttggatcagttc 81  Q
    |||||||||||||||| |||||||||||| ||||||| ||||    
T  41061614 aaaaatcgatccaaattaaacagcatataattggatcggttc 41061655  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 34277408 - 34277470
Alignment:
Q  108 ccgaatcgaatgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaacc 170  Q
    ||||| || |||||||||| |||||||||||  ||||||||| | ||||||||||||||||||    
T  34277408 ccgaaccgcatgtgatttttattttggatcggttgacattttacctcaaaaccgatccaaacc 34277470  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 3757415 - 3757468
Alignment:
Q  117 atgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaacc 170  Q
    |||||||||| |||||||||||  ||||||||||  ||||||||||||||||||    
T  3757415 atgtgatttttattttggatcggttgacattttgtctcaaaaccgatccaaacc 3757468  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 31567798 - 31567735
Alignment:
Q  110 gaatcgaatgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaaccaca 173  Q
    |||||| |||| ||||| ||||||||||| |||||||||| | || || |||||||||||||||    
T  31567798 gaatcgcatgtaatttttattttggatcggatgacattttacctcgaagccgatccaaaccaca 31567735  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 670425 - 670372
Alignment:
Q  117 atgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaacc 170  Q
    |||||||||| ||||||||||| |||||||||||  ||||||| ||| ||||||    
T  670425 atgtgatttttattttggatcgtatgacattttgtctcaaaactgattcaaacc 670372  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 42430460 - 42430513
Alignment:
Q  117 atgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaacc 170  Q
    |||| ||||| ||||||||| |  ||||||||||| ||||||||||||||||||    
T  42430460 atgtaatttttattttggatgggttgacattttgcctcaaaaccgatccaaacc 42430513  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 7700654 - 7700690
Alignment:
Q  40 aaaaatcgatccaaatgaaacagcatatatttggatc 76  Q
    |||||||||||||||| |||| |||||||||||||||    
T  7700654 aaaaatcgatccaaattaaaccgcatatatttggatc 7700690  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 23695567 - 23695515
Alignment:
Q  117 atgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaac 169  Q
    |||||||||| ||||||||||| |||||||||| | |||||| | ||||||||    
T  23695567 atgtgatttttattttggatcggatgacattttacctcaaaatccatccaaac 23695515  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 21351948 - 21351895
Alignment:
Q  117 atgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaacc 170  Q
    |||||||||| |||||||||||  ||||||||| | ||||||||||||||||||    
T  21351948 atgtgatttttattttggatcggttgacattttacctcaaaaccgatccaaacc 21351895  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 22596723 - 22596770
Alignment:
Q  40 aaaaatcgatccaaatgaaacagcatatatttggatcagttctgttcg 87  Q
    |||||||||||||||| |||| ||||||||||||||| |||| |||||    
T  22596723 aaaaatcgatccaaattaaaccgcatatatttggatcggttcggttcg 22596770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 21352035 - 21351990
Alignment:
Q  40 aaaaatcgatccaaatgaaacagcatatatttggatcagttctgtt 85  Q
    ||||| |||||||||| |||| ||||||| ||||||||||||||||    
T  21352035 aaaaaccgatccaaattaaaccgcatataattggatcagttctgtt 21351990  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 29283439 - 29283491
Alignment:
Q  118 tgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaacc 170  Q
    ||||||||| ||||||||||| |||| ||||| | ||||||||||||||||||    
T  29283439 tgtgatttttattttggatcggatgatattttacctcaaaaccgatccaaacc 29283491  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 19636281 - 19636232
Alignment:
Q  40 aaaaatcgatccaaatgaaacagcatatatttggatcagttctgttcgga 89  Q
    |||||||||||||||| |||| ||||||||||||||| | || |||||||    
T  19636281 aaaaatcgatccaaattaaaccgcatatatttggatcggatcggttcgga 19636232  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 10484036 - 10483983
Alignment:
Q  117 atgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaacc 170  Q
    |||||||||| ||||| ||| | |||||||||| | ||||||||||||||||||    
T  10484036 atgtgatttttattttagattggatgacattttacctcaaaaccgatccaaacc 10483983  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 30396023 - 30396075
Alignment:
Q  118 tgtgattttaattttggatcgaatgacattttgcttcaaaaccgatccaaacc 170  Q
    ||||||||| |||||||||||  |||| |||| | ||||||||||||||||||    
T  30396023 tgtgatttttattttggatcggttgactttttacctcaaaaccgatccaaacc 30396075  T

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