View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_17 (Length: 456)
Name: NF3229_low_17
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 120 - 439
Target Start/End: Complemental strand, 3289017 - 3288698
Alignment:
| Q |
120 |
tagtaccacttaacaaatatatttattcatcttgtttgaacatgtcaaatctctacaataactacaaatgaaagagttttatcatccctaaaaattgtca |
219 |
Q |
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| T |
3289017 |
tagtaccacttgacaaatagatttattcatcttgtttggacatgtcaaatctctacaataactacaaattaaagagttttatcatccataaaaattgtca |
3288918 |
T |
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| Q |
220 |
agacaagaccgaaacaaaatggactgtggatttcttgaaaataatttgatcatattacattgaaagaattgctatttatttactacaaacatcaattatt |
319 |
Q |
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| T |
3288917 |
agacaagaccgaaacaaaatggactgtggatttcttgaaaataatttgatcatattacattgaaagaattgctatttatttactacaaacatcaattatt |
3288818 |
T |
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| Q |
320 |
gatgaatttgactacttgaagcttgttagtttgtaagtattttttggaatggcaatcatactcgagaccacttttactactctactctttaactcccacc |
419 |
Q |
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| T |
3288817 |
gatgaatttgactacttgaagcttgttagtttctaagtattttttggaatggcaatcatactcgagaccacttttactactctactctttaactcccacc |
3288718 |
T |
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| Q |
420 |
acaattatcaggtcaatctt |
439 |
Q |
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| T |
3288717 |
acaattatcaggtcaatctt |
3288698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 3289142 - 3289056
Alignment:
| Q |
12 |
agagacgttacgatatgtaaagttgatattcgaatcctgaattctc----------tatttaaagagattttttaattattaaacta |
88 |
Q |
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| T |
3289142 |
agagacgttacgatatgtaaggttgagattcgaatcctgaattctcttcgtattcatctttaaagagattttttaattattaaacta |
3289056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 353
Target Start/End: Original strand, 3850263 - 3850330
Alignment:
| Q |
286 |
aattgctatttatttactacaaacatcaattattgatgaatttgactacttgaagcttgttagtttgt |
353 |
Q |
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| T |
3850263 |
aatttctatttatttacttcaattatcaattattgatgaatatgactttttgaagcttgttagtttgt |
3850330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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