View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_172 (Length: 234)
Name: NF3229_low_172
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_172 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37023826 - 37024047
Alignment:
| Q |
1 |
aactccaaaaatcataataattaacattttctttttaaaagaatattttgccagtttttgcgacatgtaaatctttaaaagtatcacacttgtctatatg |
100 |
Q |
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| T |
37023826 |
aactccaaaaatcataataattaacattttctttttaaaagaatattttgccagtttttgcgacatgtaaatctttaaaagtatcacacttgtctatatg |
37023925 |
T |
|
| Q |
101 |
catggcccatatgatgcaatcttcacatgcatcactttacgttacgacatgatgatatggtatcaactcggtcatataagtgctttattagcatggcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37023926 |
catggcccatatgatgcaatcttcacatgcatcactttacgttacgacatgatgatatggtatcaactcggttatataagtgctttattagcatggcttt |
37024025 |
T |
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| Q |
201 |
gtcttttttctgacatataatg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
37024026 |
gtcttttttctgacatataatg |
37024047 |
T |
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