View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_176 (Length: 228)
Name: NF3229_low_176
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_176 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 3041222 - 3041421
Alignment:
| Q |
18 |
agatcaatcttacgcaagtaaggagctccatccatgctaaccttcatgtacatttttgaaccttcattcatgttcttcttccggtacgaacacaccggag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3041222 |
agatcaatcttacgcaagtaaggagctccatccatgctaaccttcatgtacatttttgaaccttcattcatattcttcttccggtacgaacacaccggag |
3041321 |
T |
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| Q |
118 |
gccatcccacaacttgattcttcttctcgattttctggtcaccggaacctccattttcttccccgccaccgtcaatctcggagaacatcctcttcttctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3041322 |
gccatcccacaacttgattcttcttctcgattttctggtcaccggaacctccattttcttcctcgccaccgtcaatctcggagaacatcctcttcttctc |
3041421 |
T |
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