View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_178 (Length: 227)
Name: NF3229_low_178
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_178 |
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| [»] scaffold0267 (1 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 33637316 - 33637503
Alignment:
| Q |
23 |
ttaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaacagttgttgcatag |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33637316 |
ttaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaacaattgttgcatag |
33637415 |
T |
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| Q |
123 |
aagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatg |
210 |
Q |
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| T |
33637416 |
aagcttaatgtggaagaggacggggaaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatg |
33637503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 13785 - 13615
Alignment:
| Q |
25 |
aaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcataga |
123 |
Q |
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| T |
13785 |
aaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcacaacctaacataaattcagaaaaacaaacatttgttgcatacg |
13686 |
T |
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| Q |
124 |
agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt |
194 |
Q |
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| T |
13685 |
agattaatgtggacgaggacaaggcaaaaccaagctctgcatatgttcatcagcataacgaatttggttgt |
13615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 3838304 - 3838134
Alignment:
| Q |
25 |
aaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcataga |
123 |
Q |
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|||||||||| ||||||| |||||| ||||||| ||||| |||| | | |||| |||||||||||||||| ||| |||||||||||||||||| |
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| T |
3838304 |
aaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcaaaacctaacataaattcagaaaaacaaacagttgttgcatacg |
3838205 |
T |
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| Q |
124 |
agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt |
194 |
Q |
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| T |
3838204 |
agattaatgtggatgaggacaaggcaaaaccaagctctgcatatgttcctcagcataacgaatttggttgt |
3838134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 29125230 - 29125155
Alignment:
| Q |
116 |
tgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggt |
191 |
Q |
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| T |
29125230 |
tgcatagaagcttaatgcggatgaggaagaggcaaaaccaaactctacatatgttcatgagcatacataatttggt |
29125155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 29126827 - 29126661
Alignment:
| Q |
19 |
ataattaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaata-caaacagttgttg |
117 |
Q |
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||||| ||||||| || |||||||||||||||||| | |||||| ||||||| |||||||| || ||| || ||| |||| | |||| ||||||| |
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| T |
29126827 |
ataatcaaactatttaaggaaaacacaattaaggaatattcaatagttatcacaccacttgcacaacttaatgtatattaaaaaaatcaaattgttgttg |
29126728 |
T |
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| Q |
118 |
catagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaa |
185 |
Q |
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| T |
29126727 |
catagaagtttaatg-ggaatgagatgaggcaaaatcaagctatgcatatgttcaccgacataccaaa |
29126661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 33781 - 33856
Alignment:
| Q |
119 |
atagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt |
194 |
Q |
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|||| ||||||||||||| ||||| | |||||||||||||| |||||||||||| || |||||||||||||| |
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| T |
33781 |
ataggagcttaatgtggatgaggacgaggcaaaaccaagctacgcatatgttcatcggccgcccaaatttggttgt |
33856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 179
Target Start/End: Original strand, 20475663 - 20475806
Alignment:
| Q |
37 |
gaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtgg |
135 |
Q |
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||||||||||||||| |||||| ||| || | || | |||| || | |||| ||||||||| ||| | ||| ||||||||||| | |||||||| ||| |
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| T |
20475663 |
gaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaaaaataaatagttgttgcattgcagcttaatttgg |
20475762 |
T |
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| Q |
136 |
aagaggatggggcaaaaccaagctcttcatatgttcatcagcat |
179 |
Q |
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| T |
20475763 |
acaaggacgaggcaaaaccaagctctgcatatgctcatgagcat |
20475806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 13784126 - 13784176
Alignment:
| Q |
124 |
agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatc |
174 |
Q |
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||||||||||||| ||| ||| |||||||||||||| | |||||||||||| |
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| T |
13784126 |
agcttaatgtggatgagaatgaggcaaaaccaagctatgcatatgttcatc |
13784176 |
T |
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