View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3229_low_179 (Length: 227)
Name: NF3229_low_179
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_179 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 115316 - 115542
Alignment:
| Q |
1 |
atccactgtgtcatagggttgaagaaaccaatcgatgttgattcagtaaaaacccaaattcaaaactcagttatgctccaacatccaaggttcactagcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
115316 |
atccactgtgtcatagggttgaagaaaccaatcgatgttgattcagtaaaaacccaaatccaaaactcagttatgctccaacatccaaggttcactagcc |
115415 |
T |
|
| Q |
101 |
tcatggttcgtgaccatcgaggtgttgaacactggcgtccaatcaaaattgacctcgaccgccacatctttatcatcaacaacgaatcagtctccgagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
115416 |
tcatggttcgtgaccatcgaggtgttgaacactggcgtccaatcaaaattgacctcgaccgccacatctttatcatcaacaacgaatcagtctccgagga |
115515 |
T |
|
| Q |
201 |
taaggatgatgaatcagcaatcagtga |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
115516 |
taaggatgatgaatcagcaatcagtga |
115542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 14832364 - 14832587
Alignment:
| Q |
1 |
atccactgtgtcatagggttgaagaaaccaatcgatgttgattcagtaaaaacccaaattcaaaactcagttatgctccaacatccaaggttcactagcc |
100 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||||| |||||||| | |||||| || ||||| ||||||||||||||||||||||| || || | |
|
|
| T |
14832364 |
atccactgtgtcataggtctgaagaatccaattgatgttgactcagtaaataaccaaatccagaactctgttatgctccaacatccaaggtttacaagtc |
14832463 |
T |
|
| Q |
101 |
tcatggttcgtgaccatcgaggtgttgaacactggcgtccaatcaaaattgacctcgaccgccacatctttatcatcaacaacgaatcagtctccgagga |
200 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| || |||||| ||||| |||||| |||||| |||| |||||| |||||| |||||||| | |
|
|
| T |
14832464 |
tcatggtccgtgaccatcgaggcgttgaacactagcatccaattaaaatcgacctcaaccgccgaatct---tcatcatcaacgattcagtctctacaaa |
14832560 |
T |
|
| Q |
201 |
taaggatgatgaatcagcaatcagtga |
227 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
14832561 |
caaggaggatgaatcagcaatcagtga |
14832587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University