View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_184 (Length: 221)
Name: NF3229_low_184
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_184 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30959189 - 30958969
Alignment:
| Q |
1 |
ttattgctctcccatttacaatctcctccttcatttcccaaacaccttatgcattcctctttcagaatataattcaactcaaaccccttatccaaaccat |
100 |
Q |
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| T |
30959189 |
ttattgctctcccatttacaatctcctccttcacttcccaaacaccttgagcattcctctttcatagtataattcaactcaaaccccttatccaaaccat |
30959090 |
T |
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| Q |
101 |
tttcaagaaaatcatgatcaaaataatcatcataatctttcccaaaaggaaaatctgttcctactggcacttgaatatgactcatacaattccttgattc |
200 |
Q |
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| T |
30959089 |
tttcaagaaaatcatgatcaaaataatcaacataatctttcacaccaggaaaatctgctcctactggcacatgaatatgactcatacaattccttgattc |
30958990 |
T |
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| Q |
201 |
ttccaacaacctatcttcatt |
221 |
Q |
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| T |
30958989 |
ttccaacaacctatcttcatt |
30958969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 31012995 - 31012899
Alignment:
| Q |
12 |
ccatttacaatctcctccttcatttcccaaacaccttatgcattcctctttcagaatataattcaactcaaaccccttatccaaaccattttcaaga |
108 |
Q |
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|||||||||||||||| ||||| ||||||||||| || ||||||||||||| | ||||||||| ||||||||| |||| ||||||| ||| |||| |
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| T |
31012995 |
ccatttacaatctccttcttcacttcccaaacactttgcacattcctctttcacactataattcacctcaaacccattattcaaaccacttttaaga |
31012899 |
T |
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