View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_185 (Length: 221)
Name: NF3229_low_185
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_185 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 48 - 203
Target Start/End: Complemental strand, 31769546 - 31769391
Alignment:
| Q |
48 |
atttgaattgtgtatataggactatatttggcaaacatttaagatttcagaaaatcaaattgatacgatttattttgtatgcaccaataaggaccaattg |
147 |
Q |
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| T |
31769546 |
atttgaattgtgtatataggactatatttggcaaacatttaagatttcagaaaatcaaattgatacgatttattttgtatgcaccaataaggaccaattg |
31769447 |
T |
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| Q |
148 |
gaatataacatttttggcaaaagtggatcccctattggtgacaagaccctgaaatg |
203 |
Q |
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| T |
31769446 |
gaatataacatttttggcaaaagtggatcccctattggtgacaagaccctgaaatg |
31769391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31769570 - 31769532
Alignment:
| Q |
1 |
aattgcctacacactccaaaaaagatttgaattgtgtat |
39 |
Q |
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| T |
31769570 |
aattgcctacacactccaaaaaagatttgaattgtgtat |
31769532 |
T |
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