View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_188 (Length: 219)
Name: NF3229_low_188
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_188 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 713054 - 713240
Alignment:
| Q |
18 |
aatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattct |
117 |
Q |
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| T |
713054 |
aatgctgtatttggatctaatccaaaaatttcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggataatcttcaaaaacaattct |
713153 |
T |
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| Q |
118 |
gggtggacaacaactagaattgcaggctgtgatatgtgcttgaatcactaaatttattgttaaatttgttctttattttaccctatg |
204 |
Q |
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| T |
713154 |
gggtggacaacaactagaattgcaggctgtgatatgtgcttgaatcactaaatttattgttaaatttgttctttattttaccctatg |
713240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 710653 - 710512
Alignment:
| Q |
18 |
aatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
710653 |
aatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaacaatttt |
710554 |
T |
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| Q |
118 |
gggtggacaacaactagaattgcaggctgtgatatgtgcttg |
159 |
Q |
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| T |
710553 |
gggtggacaacaactagaattgcaggtcgtgatatgtacttg |
710512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 717686 - 717568
Alignment:
| Q |
18 |
aatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattct |
117 |
Q |
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| T |
717686 |
aatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaacaattct |
717587 |
T |
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| Q |
118 |
gggtggacaacaactagaa |
136 |
Q |
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| T |
717586 |
gggtggacaacaactagaa |
717568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 702384 - 702266
Alignment:
| Q |
18 |
aatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
702384 |
aatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaacaattct |
702285 |
T |
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| Q |
118 |
gggtggacaacaactagaa |
136 |
Q |
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| T |
702284 |
gggtggacaactactagaa |
702266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 716918 - 717029
Alignment:
| Q |
24 |
gtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtgg |
123 |
Q |
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| T |
716918 |
gtatttgggtctaatc---aaatttcttcagaacttctcaccaaggctcttcaagtggacaataacatagttgacaatcttcagaaacaattctggttgg |
717014 |
T |
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| Q |
124 |
acaacaactagaatt |
138 |
Q |
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||||||| ||||||| |
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| T |
717015 |
acaacaattagaatt |
717029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 35313740 - 35313843
Alignment:
| Q |
16 |
caaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaatt |
115 |
Q |
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|||||||||| ||||||||||| ||| ||| |||| ||||||||||||||||| |||||||| || || ||| || | ||| |||||||||| ||||| |
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| T |
35313740 |
caaatgctgtgtttggatctaaaccaccaatttctttggaagttctcaccaaagcctttcaagtggataaaaatgtaatcgactatcttcaaaagcaatt |
35313839 |
T |
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| Q |
116 |
ctgg |
119 |
Q |
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|||| |
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| T |
35313840 |
ctgg |
35313843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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