View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_19 (Length: 452)
Name: NF3229_low_19
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 27 - 433
Target Start/End: Complemental strand, 44693437 - 44693030
Alignment:
| Q |
27 |
acagctgctaactgcacagaacacaccagcccaaaaactgacagcagccaccagccaaactgcaacataacaggaggcaaaaaccagcacagaacatcca |
126 |
Q |
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| T |
44693437 |
acagctgctaactgcacagaacacaccagcccaaaaactgacagcagccaccagccaaactgcaacataacaggaggcaaaaaccagcacagaacatcca |
44693338 |
T |
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| Q |
127 |
gcaccactgagacggaatcaaccccgaaaaccagacaaccagcgaaggaaaaccagacagaaaacgataccttcagcagacaaaccaaacagcacaaaaa |
226 |
Q |
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| T |
44693337 |
gcaccactgagacggaatcaaccccgaaaaccagacaactagcgaaggaaaaccagacagaaaacgataccttcagcagacaaaccaaacagcacaaaaa |
44693238 |
T |
|
| Q |
227 |
caactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatattaaggcgggataggcaccacctccacgataaaact |
326 |
Q |
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| T |
44693237 |
caactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatcttaaggctggataggcaccacctccacgataaaact |
44693138 |
T |
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| Q |
327 |
ttaacct-ctcaatgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatga |
425 |
Q |
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| T |
44693137 |
ttaacctcctcaacgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatga |
44693038 |
T |
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| Q |
426 |
gtctaaat |
433 |
Q |
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| T |
44693037 |
gtctaaat |
44693030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 432
Target Start/End: Original strand, 34866072 - 34866161
Alignment:
| Q |
343 |
ttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatgagtctaaa |
432 |
Q |
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| T |
34866072 |
ttccatcacctctttctccttgtcgttaaaaatcttatcattcctcatcttccaaataacccaaattgcggcatgccaaatgagtctaaa |
34866161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 422
Target Start/End: Original strand, 28890608 - 28890672
Alignment:
| Q |
358 |
caccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaa |
422 |
Q |
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| T |
28890608 |
caccttgtcattaaaaatttgaccatttctatatttccaaagcacccaaattgttgcgtgccaaa |
28890672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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