View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_190 (Length: 217)

Name: NF3229_low_190
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_190
NF3229_low_190
[»] chr8 (2 HSPs)
chr8 (1-201)||(27220251-27220451)
chr8 (151-188)||(27220095-27220132)
[»] chr7 (1 HSPs)
chr7 (8-134)||(39844976-39845102)
[»] chr5 (1 HSPs)
chr5 (59-140)||(2688372-2688452)
[»] chr3 (5 HSPs)
chr3 (39-135)||(42773808-42773904)
chr3 (39-134)||(1547700-1547795)
chr3 (107-138)||(55167503-55167534)
chr3 (39-140)||(43073851-43073952)
chr3 (5-129)||(52612840-52612964)
[»] chr6 (1 HSPs)
chr6 (49-138)||(33113341-33113430)
[»] chr1 (1 HSPs)
chr1 (107-138)||(38548094-38548125)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 27220451 - 27220251
Alignment:
Q  1 tgcgttctcatcattgaaaatacggtcagttcttgctctccaaattatccaaatcgccgcctcccatatcatacgcaaacccttccggattttcttattg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27220451 tgcgttctcatcattgaaaatacggtcatttcttgctctccaaattatccaaatcgccgcctcccatatcatacgcaaacccttccggattttcttattg 27220352  T
Q  101 atcgggcctccactccaacactcccaatggataaataagtgggacacaactatgagtaaaaatatataaactaattcagaaattagtggttatgttagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27220351 atcgggcctccactccaacactcccaatggataaataagtgggacacaactatgagtaaaaatatataaactaattcagaaattagtggttatgttagtt 27220252  T
Q  201 t 201  Q
    |    
T  27220251 t 27220251  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 27220132 - 27220095
Alignment:
Q  151 tatgagtaaaaatatataaactaattcagaaattagtg 188  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27220132 tatgagtaaaaatatataaactaattcagaaattagtg 27220095  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 39845102 - 39844976
Alignment:
Q  8 tcatcattgaaaatacggtcagttcttgctctccaaattatccaaatcgccgcctcccatatcatacgcaaacccttccggattttcttattgatcgggc 107  Q
    |||| ||| ||||| |||||| |||| ||  ||||||| | ||||||  || ||||||||||||||||||| |||||||| ||||||||||| || |  |    
T  39845102 tcattattaaaaatccggtcatttctcgccttccaaatcacccaaattaccacctcccatatcatacgcaatcccttccgaattttcttattaatagatc 39845003  T
Q  108 ctccactccaacactcccaatggataa 134  Q
    | ||||||||||| |||||||| ||||    
T  39845002 ccccactccaacattcccaatgaataa 39844976  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 2688372 - 2688452
Alignment:
Q  59 gcctcccatatcatacgcaaacccttccggattttcttattgatcgggcctccactccaacactcccaatggataaataagt 140  Q
    |||||||| ||||| ||||| || ||||||||||||||||| |  || || ||||||||||||||||||||||| |||||||    
T  2688372 gcctcccaaatcatccgcaagccattccggattttcttatttagtggtcc-ccactccaacactcccaatggatgaataagt 2688452  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 42773808 - 42773904
Alignment:
Q  39 tccaaattatccaaatcgccgcctcccatatcatacgcaaacccttccggattttcttattgatcgggcctccactccaacactcccaatggataaa 135  Q
    ||||||||| ||||||| | |||||||| |||||||||||||| || |||| |||||| || |  |  || |||||||||||||||||||| |||||    
T  42773808 tccaaattacccaaatcacggcctcccaaatcatacgcaaaccattacggactttcttcttaagagatcccccactccaacactcccaatgaataaa 42773904  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 1547795 - 1547700
Alignment:
Q  39 tccaaattatccaaatcgccgcctcccatatcatacgcaaacccttccggattttcttattgatcgggcctccactccaacactcccaatggataa 134  Q
    ||||||| | ||||||  || ||||||||||||||||||| |||||||  |||||||| || || |  || ||||||||||| |||||||| ||||    
T  1547795 tccaaatcacccaaattaccacctcccatatcatacgcaatcccttccaaattttcttgttaatagatcccccactccaacattcccaatgaataa 1547700  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 138
Target Start/End: Original strand, 55167503 - 55167534
Alignment:
Q  107 cctccactccaacactcccaatggataaataa 138  Q
    ||||||||||||||||||||||||||||||||    
T  55167503 cctccactccaacactcccaatggataaataa 55167534  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 43073851 - 43073952
Alignment:
Q  39 tccaaattatccaaatcgccgcctcccatatcatacgcaaacccttccggattttcttattgatcgggcctccactccaacactcccaatggataaataa 138  Q
    ||||||||  |||||| ||||| | ||| |||||||||||||||||||  |||||||| || ||    || ||||||||||| |||||||| ||||| ||    
T  43073851 tccaaattgaccaaattgccgcttgccaaatcatacgcaaacccttcctaattttcttgttcattacaccaccactccaacattcccaatgaataaacaa 43073950  T
Q  139 gt 140  Q
    ||    
T  43073951 gt 43073952  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 52612840 - 52612964
Alignment:
Q  5 ttctcatcattgaaaatacggtcagttcttgctctccaaattatccaaatcgccgcctcccatatcatacgcaaacccttccggattttcttattgatcg 104  Q
    ||||||| |||||||||||| ||| | || ||| |||| |  | ||||||| || ||||||| ||||| | ||| |||||||| || |||||||  |||     
T  52612840 ttctcattattgaaaatacgatcattcctcgctttccacaaaacccaaatcaccacctcccaaatcatcctcaatcccttccgaatcttcttatgtatca 52612939  T
Q  105 ggcctccactccaacactcccaatg 129  Q
      || ||||||||||||||||||||    
T  52612940 atcccccactccaacactcccaatg 52612964  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 33113341 - 33113430
Alignment:
Q  49 ccaaatcgccgcctcccatatcatacgcaaacccttccggattttcttattgatcgggcctccactccaacactcccaatggataaataa 138  Q
    |||||||||||| | ||| ||||| | |||||| ||||||||| | |||||   ||  ||| ||||||||||||||||||||||||||||    
T  33113341 ccaaatcgccgcttgccaaatcatcctcaaacctttccggattctattattccacgctccttcactccaacactcccaatggataaataa 33113430  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 138
Target Start/End: Complemental strand, 38548125 - 38548094
Alignment:
Q  107 cctccactccaacactcccaatggataaataa 138  Q
    ||||||||||||||||||||||||||||||||    
T  38548125 cctccactccaacactcccaatggataaataa 38548094  T

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