View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_21 (Length: 447)
Name: NF3229_low_21
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 236 - 426
Target Start/End: Complemental strand, 47506240 - 47506050
Alignment:
| Q |
236 |
gtacaacttgtgcttttaggtgctgtttacttttatataaattgggttgtctttaaaaaatctagctaaaaagttgtacaaattaaagtcattaactact |
335 |
Q |
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| T |
47506240 |
gtacaacttgtgcttttaggtgctgtttacttttatataaattgggttgtctttaaaaaatctagctaaaaagttgtacaaattaaagtcattaactact |
47506141 |
T |
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| Q |
336 |
tcaatgctttttggcaatcaactatctccaacataatcctcattttctgctgaaatagtacaagtttcattgaccacaccacaatgggagt |
426 |
Q |
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| T |
47506140 |
tcaatgctttttggcaatcaactatctccaacataaccctcattttctgctgaaatagtacaagtttcattgaccacaccacaatgggagt |
47506050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 47506463 - 47506286
Alignment:
| Q |
1 |
tgtaaatcctttcgttttcaattttctaatttagtaaaacattgtcatcaattttcctttgggccaataaaacagttgcaattaaggagtaccttgtcca |
100 |
Q |
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| T |
47506463 |
tgtaaatcctttctttttcaattttctaatttagtaaaacattgtcatcaatttgcctttgggccaataaaacagttgcaattaaggagtaccttgtcca |
47506364 |
T |
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| Q |
101 |
gaaagtgtgctacaaaaaatttaaatgatcaacaactgcctaaaattatccaagtctataaaacctagaaggtggtac |
178 |
Q |
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| T |
47506363 |
gaaagtgtgctacaaaaaatttaaatgatcaacaactgcctaaaattatccaagtctataaaacctagaaggtggtac |
47506286 |
T |
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