View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_22 (Length: 446)
Name: NF3229_low_22
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 40976839 - 40976420
Alignment:
| Q |
18 |
gttggtatcctcccccaatctctagtttcacagatacatatttcatttacaatctcatttttattaaattattttatttggaacattaatttgaacagtc |
117 |
Q |
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| T |
40976839 |
gttggtatcctccccctctctctagtttcatagacacatgcttcattaacaatctcatttttattaaattattttatttggagcattaatttgaacagtc |
40976740 |
T |
|
| Q |
118 |
taaaactctgaattggttagtcaacagtgcaagactcagaattttagggctagactttgttttctatttttaattacaaacatttgtagtagtagtagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40976739 |
taaaactctgaattggttagtcaacagtgcaagactaagaattttagagctagactttgttttctatttttaattactaacatttgtagtagtagtagaa |
40976640 |
T |
|
| Q |
218 |
taatacaatcactcaaaccactctctactcttacttaattactttgcaactcacaatgcaatccatttaattttcaggattgatttctctgtccagacat |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40976639 |
taatacaattactcaaaccactctctactcttacttaattactttgcaactcacaatgcaatccgtttaattttcaggattgatttctctgtccagacat |
40976540 |
T |
|
| Q |
318 |
tctcagactacacaaaatatttgagaatatgtctggatgcaataaatcacctcaaaacgatcaacattcaatcaaatattcttggattcaacatggaggg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40976539 |
tctcagactacacaaaatatttgagaatatgtctggatgcaataaatcacctcaaaacgatcaacattcaatcaaatattcgtggattcaacatggaggg |
40976440 |
T |
|
| Q |
418 |
gtatcctctaaggttcatct |
437 |
Q |
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|||||||||||||||||||| |
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| T |
40976439 |
gtatcctctaaggttcatct |
40976420 |
T |
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