View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_23 (Length: 445)

Name: NF3229_low_23
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_23
NF3229_low_23
[»] chr4 (11 HSPs)
chr4 (18-431)||(18724160-18724572)
chr4 (159-431)||(18699475-18699747)
chr4 (159-431)||(18655552-18655824)
chr4 (159-431)||(18679642-18679914)
chr4 (159-431)||(18731579-18731851)
chr4 (18-164)||(18699769-18699915)
chr4 (18-164)||(18679936-18680076)
chr4 (105-164)||(18655846-18655905)
chr4 (159-236)||(17989320-17989397)
chr4 (159-236)||(18073592-18073669)
chr4 (105-164)||(18731873-18731933)
[»] chr1 (3 HSPs)
chr1 (158-431)||(268432-268705)
chr1 (161-431)||(28127754-28128019)
chr1 (161-431)||(28164437-28164707)
[»] chr8 (1 HSPs)
chr8 (166-431)||(29273858-29274123)
[»] chr6 (52 HSPs)
chr6 (159-429)||(27611092-27611362)
chr6 (159-429)||(27718469-27718739)
chr6 (159-429)||(27724935-27725205)
chr6 (159-431)||(27698582-27698854)
chr6 (159-426)||(28780966-28781233)
chr6 (161-431)||(26622805-26623075)
chr6 (161-431)||(26728783-26729053)
chr6 (162-426)||(26802272-26802536)
chr6 (159-426)||(31284115-31284382)
chr6 (159-417)||(28786105-28786363)
chr6 (159-417)||(28792226-28792484)
chr6 (162-431)||(26861446-26861715)
chr6 (161-427)||(26646302-26646574)
chr6 (161-427)||(26752270-26752542)
chr6 (164-429)||(27593110-27593375)
chr6 (159-431)||(27229059-27229331)
chr6 (159-429)||(27604795-27605071)
chr6 (164-431)||(27677702-27677969)
chr6 (166-431)||(27678780-27679045)
chr6 (266-431)||(26823774-26823939)
chr6 (166-431)||(27706490-27706755)
chr6 (159-431)||(26655816-26656088)
chr6 (159-431)||(26761787-26762059)
chr6 (194-431)||(26884025-26884262)
chr6 (159-431)||(27338153-27338425)
chr6 (159-431)||(27398893-27399165)
chr6 (214-431)||(27531285-27531502)
chr6 (297-431)||(28234529-28234663)
chr6 (245-431)||(28242717-28242903)
chr6 (188-431)||(28185222-28185465)
chr6 (158-429)||(28139367-28139638)
chr6 (188-431)||(28180970-28181213)
chr6 (226-431)||(25579613-25579818)
chr6 (226-431)||(25481636-25481841)
chr6 (226-431)||(26142759-26142964)
chr6 (244-426)||(25507002-25507178)
chr6 (194-429)||(28325343-28325578)
chr6 (159-236)||(27427886-27427963)
chr6 (227-431)||(28226845-28227049)
chr6 (226-431)||(26055820-26056025)
chr6 (226-431)||(26075790-26075995)
chr6 (170-247)||(26018759-26018836)
chr6 (170-247)||(26139463-26139540)
chr6 (306-431)||(28149912-28150036)
chr6 (310-429)||(26342024-26342143)
chr6 (278-325)||(27665311-27665358)
chr6 (373-431)||(28297801-28297859)
chr6 (373-431)||(28514214-28514272)
chr6 (263-429)||(29825958-29826124)
chr6 (164-197)||(25071485-25071518)
chr6 (226-431)||(26048739-26048944)
chr6 (226-431)||(26069908-26070113)
[»] scaffold0349 (3 HSPs)
scaffold0349 (159-431)||(3509-3782)
scaffold0349 (159-422)||(14452-14715)
scaffold0349 (159-246)||(8074-8161)
[»] scaffold0277 (2 HSPs)
scaffold0277 (159-426)||(13725-13992)
scaffold0277 (159-429)||(4761-5031)
[»] scaffold1254 (1 HSPs)
scaffold1254 (159-426)||(10-277)
[»] scaffold0419 (1 HSPs)
scaffold0419 (159-426)||(7352-7619)
[»] scaffold0038 (4 HSPs)
scaffold0038 (297-431)||(34690-34824)
scaffold0038 (245-431)||(42879-43065)
scaffold0038 (194-429)||(116658-116893)
scaffold0038 (227-431)||(27343-27547)
[»] scaffold0019 (1 HSPs)
scaffold0019 (194-431)||(58370-58607)
[»] scaffold0003 (1 HSPs)
scaffold0003 (159-236)||(59400-59477)
[»] scaffold0713 (1 HSPs)
scaffold0713 (170-247)||(5916-5993)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 18724572 - 18724160
Alignment:
Q  18 tggtccacacggctataggaagtagtccggaagtttaacaggccannnnnnncctaagttttgtccttgttatatacaccacaaactcataccgaagact 117  Q
    ||||||||||||||||||||||| ||| ||||||||||||| |||       | ||||||||||||||||||||||||||||||||||||||||||||||    
T  18724572 tggtccacacggctataggaagtggtcaggaagtttaacagaccatttttgtcataagttttgtccttgttatatacaccacaaactcataccgaagact 18724473  T
Q  118 ccacatttcagaccacaaaaacttaaactcatattctgcattctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattc 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18724472 ccacatttcagaccacaaaaacttaa-ctcatattctgcattctcaattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattc 18724374  T
Q  218 acttaccaagtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttca 317  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  18724373 acttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctcttactgacaagggaatccacaccttca 18724274  T
Q  318 ttgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaacta 417  Q
    ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18724273 ttgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaacta 18724174  T
Q  418 tgcctcttcttcat 431  Q
    ||||||||||||||    
T  18724173 tgcctcttcttcat 18724160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 159 - 431
Target Start/End: Complemental strand, 18699747 - 18699475
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||    
T  18699747 tctcaattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcactgacactcg 18699648  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
    | ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  18699647 tgacggttttactggccatctctacaaagctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagtggggatgaaatcaaacca 18699548  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18699547 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 18699475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 159 - 431
Target Start/End: Complemental strand, 18655824 - 18655552
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  18655824 tctcaattttcatggctaggcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcg 18655725  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18655724 taacggttttactgggcatctctacaaagctcttactgacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggatgaaatcaaacca 18655625  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18655624 tcactcgacaatgccattcaagagtctaggatctttattcctgtgttttctatcaactatgcctcttcttcat 18655552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 159 - 431
Target Start/End: Complemental strand, 18679914 - 18679642
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  18679914 tctctattttcatggctatgcaatcaccttcctcattctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcg 18679815  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
    ||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||    
T  18679814 taacggttttactggtcatctctacaaggctcttactgacaaaggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaacca 18679715  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18679714 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 18679642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 159 - 431
Target Start/End: Complemental strand, 18731851 - 18731579
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  18731851 tctcgattttcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcg 18731752  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
    | ||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||    
T  18731751 tgacggttttactggccatctctacagagctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaacca 18731652  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18731651 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 18731579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 18699915 - 18699769
Alignment:
Q  18 tggtccacacggctataggaagtagtccggaagtttaacaggccannnnnnn-cctaagttttgtccttgttatatacaccacaaactcataccgaagac 116  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||        ||||||||| |||||||||||||||||||||||||||||||||||||    
T  18699915 tggtccacacggctataggaagtagtcaggaagtttaacagaccattttttttcctaagttt-gtccttgttatatacaccacaaactcataccgaagac 18699817  T
Q  117 tccacatttcagaccacaaaaacttaaactcatattctgcattctcaa 164  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18699816 tccacatttcagaccacaaaaacttaacctcatattctgcattctcaa 18699769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 18680076 - 18679936
Alignment:
Q  18 tggtccacacggctataggaagtagtccggaagtttaacaggccannnnnnncctaagttttgtccttgttatatacaccacaaactcataccgaagact 117  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||       | |||||||| |||||||||||||           ||||| |||||||    
T  18680076 tggtccacacggctataggaagtagtcaggaagtttaacagaccatttttgtcataagttttctccttgttatatagtta-------catactgaagact 18679984  T
Q  118 c-cacatttcagaccacaaaaacttaaactcatattctgcattctcaa 164  Q
    | |||||  || ||||||||||||||||||||||||||||||||||||    
T  18679983 ctcacatcacataccacaaaaacttaaactcatattctgcattctcaa 18679936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 18655905 - 18655846
Alignment:
Q  105 cataccgaagactccacatttcagaccacaaaaacttaaactcatattctgcattctcaa 164  Q
    ||||| |||||||||||||  || ||||||||||||||||||||||||||||||||||||    
T  18655905 catactgaagactccacatcacataccacaaaaacttaaactcatattctgcattctcaa 18655846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 17989397 - 17989320
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctca 236  Q
    |||||||||||||||| ||||||||||||| ||  ||||||||||||||||||  ||||| |||| | ||||||||||    
T  17989397 tctcaattctcatggccatgcaattacctttctattcctcttcattttcctatgcattcagttacgatgtgttcctca 17989320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 18073592 - 18073669
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctca 236  Q
    |||||||||||||||| ||||||||||||| ||  ||||||||||||||||||  ||||| |||| | ||||||||||    
T  18073592 tctcaattctcatggccatgcaattacctttctattcctcttcattttcctatgcattcagttacgatgtgttcctca 18073669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 18731933 - 18731873
Alignment:
Q  105 cataccgaagactc-cacatttcagaccacaaaaacttaaactcatattctgcattctcaa 164  Q
    ||||| |||||||| |||||  || ||||||||||||||||||||||||||||||||||||    
T  18731933 catactgaagactctcacatcacataccacaaaaacttaaactcatattctgcattctcaa 18731873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 158 - 431
Target Start/End: Complemental strand, 268705 - 268432
Alignment:
Q  158 ttctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactc 257  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||| | || ||| ||||  | ||||| || ||||||| |||||| ||  |||| ||||    
T  268705 ttctcagttctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatttgcctaccaggtcttcctcaacttcagaggcggtgacactc 268606  T
Q  258 gtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacc 357  Q
    || | ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| || ||||| |||||| ||||||||||    
T  268605 gtgagggttttattggccatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaacc 268506  T
Q  358 atcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  268505 atcactcgacaatgccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcat 268432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 161 - 431
Target Start/End: Complemental strand, 28128019 - 28127754
Alignment:
Q  161 tcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgta 260  Q
    |||||||||||||||||||||| || ||||||      |||| |||||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||     
T  28128019 tcaattctcatggctatgcaatcacattcctc------ttcaatttcctatggattcacataccaagtgttcctcagcttcaggggcagtgacactcgtg 28127926  T
Q  261 acggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtgg-ggataaaatcaaaccat 359  Q
    ||||||| |||||||||||||||||||| |||  | |||||||||||||||| |||||||||||  || | ||  | || || | | ||||||| ||| |    
T  28127925 acggtttcactggccatctctacaaggccctttatgacaagggaatccacacattcattgatgattgtaatcttgagagaggagaaaaaaatcacaccgt 28127826  T
Q  360 cactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    ||||    || ||||||||||| ||||| || || |||||||| ||||||| ||||||||||||||||||||    
T  28127825 cacttttaaaggccattgaagaatctagaatttttattcctgtattttctaccaactatgcctcttcttcat 28127754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 161 - 431
Target Start/End: Complemental strand, 28164707 - 28164437
Alignment:
Q  161 tcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgta 260  Q
    ||||||||||||||||| | ||  | |||||| ||||||||| |||||||| ||||||| ||||||||||||||||| || ||||| ||||| ||||||     
T  28164707 tcaattctcatggctatacgatcgcattcctcttcctcttcaatttcctatggattcacataccaagtgttcctcagttttaggggcagtgacactcgtg 28164608  T
Q  261 acggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatc 360  Q
    ||||||| |||||||||||||| ||||| |||    |||||||||| ||||| |||||||||||  |||| ||  | || || ||  |||||| ||| ||    
T  28164607 acggtttcactggccatctctataaggcccttgacgacaagggaattcacacattcattgatgattgtgatcttgagagaggagaagaaatcacaccgtc 28164508  T
Q  361 actcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    | ||  ||| ||||||||| | ||| | || || ||||||||||| |||||||||||||||||||||||||    
T  28164507 attcatcaaggccattgaaaaatcttgaatttttattcctgtgttatctatcaactatgcctcttcttcat 28164437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 166 - 431
Target Start/End: Complemental strand, 29274123 - 29273858
Alignment:
Q  166 tctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgtaacggt 265  Q
    ||||||||||||||||| ||||||||| ||||||||| | || ||| ||||||||||||| || ||||||| ||| || ||  |||| |||||| |||||    
T  29274123 tctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacggt 29274024  T
Q  266 tttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcg 365  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| || ||||| |||||| |||||||| |||||||||    
T  29274023 tttattggccatctctacaagactcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaatcatcactcg 29273924  T
Q  366 acaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    |||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||    
T  29273923 acaatgtcattgaagagtctagaatttttattcctgtgttttctatcaactatgcctcttcttcat 29273858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 52)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 159 - 429
Target Start/End: Complemental strand, 27611362 - 27611092
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||| ||||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||| || ||||| | ||| |||||    
T  27611362 tctcaattttcatggctatgcaattagcttcctcttcttcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcg 27611263  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||  |||||||||||||||||||| ||||||||||||| |||||||||||||||  ||| || | ||| || ||| |||||| ||||    
T  27611262 ccacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttccaagaggagatgaaatcacacca 27611163  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttc 429  Q
    ||||||  ||| |||||||| || |||||||| || |||||||||||||||||||||||||||||||||||    
T  27611162 tcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctcttcttc 27611092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 159 - 429
Target Start/End: Complemental strand, 27718739 - 27718469
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| ||| || ||||||||||||||||||||||||| || ||||| | ||| |||||    
T  27718739 tctcaattctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcg 27718640  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      || ||||||| ||  |||||||||||||||||||| ||||||||||||| |||||||||||||||  ||| || ||||| || ||| |||||| ||||    
T  27718639 gcacagttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacacca 27718540  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttc 429  Q
    ||||||  ||| |||||||| || |||||||| || |||||||||||||||||||||||||||||||||||    
T  27718539 tcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctcttcttc 27718469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 159 - 429
Target Start/End: Complemental strand, 27725205 - 27724935
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||| |||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || || ||||| | ||| |||||    
T  27725205 tctcaattgtcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcg 27725106  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||  |||||||||||||||||||| ||||||||||||| |||||||||||||||  ||| || ||||| || ||| |||||| ||||    
T  27725105 gcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacacca 27725006  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttc 429  Q
    ||||||  ||| |||||||| || |||||||| || |||||||||||||||||||||||||||| ||||||    
T  27725005 tcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctattcttc 27724935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 159 - 431
Target Start/End: Complemental strand, 27698854 - 27698582
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |||| || ||||| | ||| |||||    
T  27698854 tctcaattctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcg 27698755  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||  |||||||||||||||||||| ||||||||||||| |||||||||||||||  ||| || ||||| || ||| |||||| ||||    
T  27698754 gcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacacca 27698655  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    ||||||  ||| |||||||| || |||||||| || ||||||||||||||| |||||||||| ||||||||||    
T  27698654 tcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctctcaactatgcatcttcttcat 27698582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 159 - 426
Target Start/End: Original strand, 28780966 - 28781233
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||||||||||||| || ||||| | ||| |||||    
T  28780966 tctcaattatcatggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcg 28781065  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||| |||||||||||||||||||| ||||||||||| | |||||||||||||||  ||| || ||||| || ||| |||||| ||||    
T  28781066 ccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacacca 28781165  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttc 426  Q
    ||||||  ||| ||||| ||||| |||||||| || ||||||||||||||||||||||||||| ||||    
T  28781166 tcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactatgccacttc 28781233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 161 - 431
Target Start/End: Original strand, 26622805 - 26623075
Alignment:
Q  161 tcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgta 260  Q
    |||||| ||||||||||||||| ||| ||||| ||||||||| ||||||||| |||||  |||||||||||||| || ||||| || ||||| |||||      
T  26622805 tcaattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggt 26622904  T
Q  261 acggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatc 360  Q
    ||||||| |||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| || ||||| |||||  |||||||||||||    
T  26622905 acggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggacgaaatcaaaccatc 26623004  T
Q  361 actcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    ||| |||||||| || |||||||||||||| || |||||||||||||||  ||||||||| | ||||||||    
T  26623005 acttgacaatgctatcgaagagtctaggatttttattcctgtgttttctcccaactatgcatattcttcat 26623075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 161 - 431
Target Start/End: Original strand, 26728783 - 26729053
Alignment:
Q  161 tcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgta 260  Q
    |||||| ||||||||||||||| ||| ||||| ||||||||| ||||||||| |||||  |||||||||||||| || ||||| || ||||| |||||      
T  26728783 tcaattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggt 26728882  T
Q  261 acggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatc 360  Q
    ||||||| |||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| || ||||| |||||  |||||||||||||    
T  26728883 acggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggacgaaatcaaaccatc 26728982  T
Q  361 actcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    ||| |||||||| || |||||||||||||| || |||||||||||||||  ||||||||| | ||||||||    
T  26728983 acttgacaatgctatcgaagagtctaggatttttattcctgtgttttctcccaactatgcatattcttcat 26729053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 162 - 426
Target Start/End: Original strand, 26802272 - 26802536
Alignment:
Q  162 caattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgtaa 261  Q
    ||||| ||||||||||||| |  ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||||| | ||| |||||  |    
T  26802272 caattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggta 26802371  T
Q  262 cggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatca 361  Q
    ||||||||| ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||  ||| || ||||| || ||| |||||| |||||||    
T  26802372 cggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 26802471  T
Q  362 ctcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttc 426  Q
    |||  ||| ||||||||||| ||||| || || ||||||||||||||||||||||||||||||||    
T  26802472 ctcatcaaggccattgaagaatctagaatttttattcctgtgttttctatcaactatgcctcttc 26802536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 159 - 426
Target Start/End: Original strand, 31284115 - 31284382
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||| ||||||||||||||||| | ||||||| ||||||||| ||||||||  |||||  |||||||| ||||| || |||||||| ||||| |||||    
T  31284115 tctcaaatctcatggctatgcaatcatcttcctcttcctcttcaatttcctatgtattcaaataccaagtattccttagtttcaggggaagtgacactcg 31284214  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      | ||||| || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||  |||| || ||||| |||||| |||||| ||||    
T  31284215 gtatggtttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagtgaacttcaaagaggggatgaaatcacacca 31284314  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttc 426  Q
    |||||||||||||||||||||||||||||||| || || || |||||||||  |||||||||||||||    
T  31284315 tcactcgacaatgccattgaagagtctaggatttttatccccgtgttttctgccaactatgcctcttc 31284382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 159 - 417
Target Start/End: Original strand, 28786105 - 28786363
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||||| |||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| | ||| |||||    
T  28786105 tctcaattcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcg 28786204  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||  |||||||||||||||||||| ||||||||||| | |||||||||||||||  ||| || ||||| || ||| |||||| ||||    
T  28786205 ccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacacca 28786304  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaacta 417  Q
    ||||||  ||| ||||| ||||| |||||||| || |||||||||||||||||||||||    
T  28786305 tcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaacta 28786363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 159 - 417
Target Start/End: Original strand, 28792226 - 28792484
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||||| |||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| | ||| |||||    
T  28792226 tctcaattcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcg 28792325  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||  |||||||||||||||||||| ||||||||||| | |||||||||||||||  ||| || ||||| || ||| |||||| ||||    
T  28792326 ccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacacca 28792425  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaacta 417  Q
    ||||||  ||| ||||| ||||| |||||||| || |||||||||||||||||||||||    
T  28792426 tcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaacta 28792484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 162 - 431
Target Start/End: Original strand, 26861446 - 26861715
Alignment:
Q  162 caattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgtaa 261  Q
    ||||||| ||||||||||||| ||||| ||| ||||||||  |||||||| ||||||  ||||| || |||||||| ||||| || ||||| |||||  |    
T  26861446 caattctgatggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggta 26861545  T
Q  262 cggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatca 361  Q
     |||||||| ||  |||||||||||||||||||| |||||||||| ||||||||||| ||||| ||||| || ||||| |||||| ||||||||  ||||    
T  26861546 tggttttaccggtaatctctacaaggctcttactgacaagggaattcacaccttcatggatgatcgtgaacttcaaagaggggatgaaatcaaaagatca 26861645  T
Q  362 ctcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||  ||||||||||||||| ||||    
T  26861646 ctcgacaatgccattgaagagtctagaattttcattcctgtgttttctgccaactatgcctcttcgtcat 26861715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 161 - 427
Target Start/End: Original strand, 26646302 - 26646574
Alignment:
Q  161 tcaattctcatggctatgcaattaccttcctcatcctcttcat------tttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgata 254  Q
    ||||||||||||||||||||||  |||||||  |||||||| |      |||||||  ||||||| ||||| || ||||||| ||||||||| ||||| |    
T  26646302 tcaattctcatggctatgcaatctccttcctattcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgaca 26646401  T
Q  255 ctcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaa 354  Q
    ||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||  |||| ||  | || || ||| ||||||     
T  26646402 ctcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatgaaatcac 26646501  T
Q  355 accatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttct 427  Q
    ||||||||||  ||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||    
T  26646502 accatcactcatcaaggccattgaagaatctaggatttttattcctgtgttttctatcaactatgcctcttct 26646574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 161 - 427
Target Start/End: Original strand, 26752270 - 26752542
Alignment:
Q  161 tcaattctcatggctatgcaattaccttcctcatcctcttcat------tttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgata 254  Q
    ||||||||||||||||||||||  |||||||  |||||||| |      |||||||  ||||||| ||||| || ||||||| ||||||||| ||||| |    
T  26752270 tcaattctcatggctatgcaatctccttcctattcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgaca 26752369  T
Q  255 ctcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaa 354  Q
    ||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||  |||| ||  | || || ||| ||||||     
T  26752370 ctcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatgaaatcac 26752469  T
Q  355 accatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttct 427  Q
    ||||||||||  ||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||    
T  26752470 accatcactcatcaaggccattgaagaatctaggatttttattcctgtgttttctatcaactatgcctcttct 26752542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 164 - 429
Target Start/End: Complemental strand, 27593375 - 27593110
Alignment:
Q  164 attctcatggctatgcaattaccttcctcatcctcttcattttcctatcgatt-cacttaccaagtgttcctcagcttcaggggtagtgatactcgtaac 262  Q
    ||||||||||||||||||| ||||||||| ||| ||||| |||||||| |||| ||  |||||||| |||||||| ||||| || ||||| |||||  ||    
T  27593375 attctcatggctatgcaatcaccttcctcttccacttcaatttcctat-gattacaaataccaagtattcctcagtttcagaggaagtgacactcggtac 27593277  T
Q  263 ggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcac 362  Q
    ||||| || ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||  ||  || ||||| ||  || |||||| ||||||||    
T  27593276 ggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatggtcttcaaagaggaaatgaaatcacaccatcac 27593177  T
Q  363 tcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttc 429  Q
    |   ||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  27593176 ttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttc 27593110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 159 - 431
Target Start/End: Original strand, 27229059 - 27229331
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||| |||||||||||| |||| ||||||||| |||||||||||||||| | |||||||||||||||||||||| || || ||||| | ||| |||||    
T  27229059 tctcaagtctcatggctatacaatcaccttcctcttcctcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcg 27229158  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||||||||||  ||| || ||||| || ||  |||||| ||||    
T  27229159 gcacggttttaccggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagacgaaatcacacca 27229258  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    ||||||| ||| |||||||| || ||| |||| || |||||  | ||||||  ||||||||| ||||||||||    
T  27229259 tcactcgtcaaggccattgacgaatctcggatttttattcccatattttctgccaactatgcatcttcttcat 27229331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 159 - 429
Target Start/End: Complemental strand, 27605071 - 27604795
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctc------ttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtga 252  Q
    ||||||||||||||||||||||||||||||||||||||||      |||||||||||||  ||||||||||||||||||||| || || ||||| | |||    
T  27605071 tctcaattctcatggctatgcaattaccttcctcatcctcatcctcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactga 27604972  T
Q  253 tactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatc 352  Q
     |||||  |||||||||| ||| |||||||||||||||||||| |||||||||| || ||||||||||||||   ||| || | ||| || ||| |||||    
T  27604971 cactcgatacggttttaccggcaatctctacaaggctcttactgacaagggaattcataccttcattgatgaaaatgatcttcgaagaggagatgaaatc 27604872  T
Q  353 aaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttc 429  Q
    | |||| ||||   ||| |||||||| || || ||||| || |||||||||||||||||||| ||||||||||||||    
T  27604871 acaccagcacttctcaaggccattgatgaatccaggatttttattcctgtgttttctatcaaatatgcctcttcttc 27604795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 164 - 431
Target Start/End: Complemental strand, 27677969 - 27677702
Alignment:
Q  164 attctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgtaacg 263  Q
    ||||||||||||||||||| ||||||||| ||| ||||| ||||||||   | ||  |||||||| |||||||  ||||| || ||||| |||||  |||    
T  27677969 attctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcaatttcagaggaagtgacactcggtacg 27677870  T
Q  264 gttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcact 363  Q
    |||| || ||| |||||||||||||||||  | |||||||||||||||||||||||||  | | ||| || ||||| |||||| |||||| |||||||||    
T  27677869 gtttcaccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaggggatgaaatcacaccatcact 27677770  T
Q  364 cgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
       ||| |||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  27677769 tctcaaggccattgaagagtctaggatttttattgctgtgttttctatcaactatgcctcttcttcat 27677702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 166 - 431
Target Start/End: Original strand, 27678780 - 27679045
Alignment:
Q  166 tctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgtaacggt 265  Q
    ||||||||||||||||| ||||||||| ||| ||||| ||||||||   | ||  |||||||| |||||||| ||||| || ||||| |||||  |||||    
T  27678780 tctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggt 27678879  T
Q  266 tttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcg 365  Q
    || || ||  |||||||||||||||||||| ||||||||||| |||||||||||||| |   ||  || ||||| || ||| |||||| |||||||||      
T  27678880 ttcaccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatggtcttcaaagaggagatgaaatcacaccatcacttc 27678979  T
Q  366 acaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
     ||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  27678980 tcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcat 27679045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 266 - 431
Target Start/End: Original strand, 26823774 - 26823939
Alignment:
Q  266 tttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcg 365  Q
    ||||| ||| |||||||||||||||||||  |||||||||||||||||||  ||||||| ||||| || ||||| |||||||||||| ||| |||||||     
T  26823774 tttaccggcaatctctacaaggctcttacagacaagggaatccacaccttttttgatgatcgtgaacttcaaagaggggataaaatcgaacaatcactca 26823873  T
Q  366 acaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    | ||||||||||||||||||||||| || |||||||||||||||  ||||||||||||||||||||    
T  26823874 ataatgccattgaagagtctaggatttttattcctgtgttttctgccaactatgcctcttcttcat 26823939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 166 - 431
Target Start/End: Complemental strand, 27706755 - 27706490
Alignment:
Q  166 tctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgtaacggt 265  Q
    ||||||||||||||||| ||||| ||| ||| ||||| ||||||||   | ||  |||||||| |||||||| ||||| ||  |||| |||||  |||||    
T  27706755 tctcatggctatgcaatcacctttctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaggtgacactcggtacggt 27706656  T
Q  266 tttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcg 365  Q
    || || ||| |||||||||||||| ||  | |||||||||||||||||||||||||  | | ||| || |||||  ||||| |||||| |||||||||      
T  27706655 ttcacaggcaatctctacaaggcttttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaagggatgaaatcacaccatcacttc 27706556  T
Q  366 acaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
     ||| |||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  27706555 tcaaggccattgaagagtctaggatttttattcctgtgttttctatcacctatgcctcttcttcat 27706490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 159 - 431
Target Start/End: Original strand, 26655816 - 26656088
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||| | || |  ||||||||||||||||| || ||||| | ||| || ||    
T  26655816 tctcaattctcatggctatacaatcaccttcctcatcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccg 26655915  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||| |||||||||||||||||| | | ||||||||||| || ||||||||||||  ||| || |  || || ||| |||||| ||||    
T  26655916 gcacggttttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacacca 26656015  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    |||||||  || ||||||||||| || ||||| || |||||  | ||||||  ||||||||| ||||||||||    
T  26656016 tcactcgttaaggccattgaagaatccaggatttttattcccatattttctgccaactatgcatcttcttcat 26656088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 159 - 431
Target Start/End: Original strand, 26761787 - 26762059
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||| | || |  ||||||||||||||||| || ||||| | ||| || ||    
T  26761787 tctcaattctcatggctatacaatcaccttcctcatcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccg 26761886  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||| |||||||||||||||||| | | ||||||||||| || ||||||||||||  ||| || |  || || ||| |||||| ||||    
T  26761887 gcacggttttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacacca 26761986  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    |||||||  || ||||||||||| || ||||| || |||||  | ||||||  ||||||||| ||||||||||    
T  26761987 tcactcgttaaggccattgaagaatccaggatttttattcccatattttctgccaactatgcatcttcttcat 26762059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 194 - 431
Target Start/End: Original strand, 26884025 - 26884262
Alignment:
Q  194 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctctta 293  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||| || ||||| |||||  | ||||| |||||  ||||||||||||||||||    
T  26884025 tcctcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctctta 26884124  T
Q  294 ctaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatctt 393  Q
    |||||||||||||||||||||||||||||||   | | || | ||| ||     |||||| ||||||||||  ||| ||||||||||| ||||| || ||    
T  26884125 ctaacaagggaatccacaccttcattgatgataatcatcttccaagaggaagcgaaatcacaccatcactcatcaaggccattgaagaatctagaatttt 26884224  T
Q  394 cattcctgtgttttctatcaactatgcctcttcttcat 431  Q
     |||||  | ||||||| ||||||||| ||||||||||    
T  26884225 tattccaatattttctaccaactatgcatcttcttcat 26884262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 159 - 431
Target Start/End: Complemental strand, 27338425 - 27338153
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||||||||||||||||||| || |||||| ||||||||| |||||| | | ||||  ||||| ||||||||||| || ||||  | ||| ||||     
T  27338425 tctcaattctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgacactct 27338326  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
    | |||||||||| ||| |||||||||||||||||| | ||||||||||| | |||||||||||||||   || ||  |||| || ||| ||| || ||||    
T  27338325 ttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacacca 27338226  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    ||||| | ||| |||||||||||||||||||| || |||||  | ||||||   |||||||| ||||||||||    
T  27338225 tcacttgtcaaggccattgaagagtctaggattttgattcccatattttctgcaaactatgcatcttcttcat 27338153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 159 - 431
Target Start/End: Complemental strand, 27399165 - 27398893
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||||||||||||||||||| || |||||| ||||||||| |||||| | | ||||  ||||| ||||||||||| || ||||  | ||| ||||     
T  27399165 tctcaattctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgacactct 27399066  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
    | |||||||||| ||| |||||||||||||||||| | ||||||||||| | |||||||||||||||   || ||  |||| || ||| ||| || ||||    
T  27399065 ttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacacca 27398966  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    ||||| | ||| |||||||||||||||||||| || |||||  | ||||||   |||||||| ||||||||||    
T  27398965 tcacttgtcaaggccattgaagagtctaggattttgattcccatattttctgcaaactatgcatcttcttcat 27398893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 214 - 431
Target Start/End: Complemental strand, 27531502 - 27531285
Alignment:
Q  214 attcacttaccaagtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacacc 313  Q
    |||||||||||||||||||||||| || |||||    || |||||  |||||||||| ||  |||||||||||||||||||| ||||||||||| | |||    
T  27531502 attcacttaccaagtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctatacc 27531403  T
Q  314 ttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatca 413  Q
    ||||||||||||  ||| || ||||| || ||| |||||| |||||||||  | |||||||||||| | |||||||| || ||||| || ||||||   |    
T  27531402 ttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactaaaaaatgccattgaaaaatctaggatttttattcccgtattttctgaaa 27531303  T
Q  414 actatgcctcttcttcat 431  Q
    ||||||| ||||||||||    
T  27531302 actatgcatcttcttcat 27531285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 297 - 431
Target Start/End: Original strand, 28234529 - 28234663
Alignment:
Q  297 acaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcat 396  Q
    ||||||||||||||||||||||||||||| | ||||| ||| | || ||| |||| | |||||||||   ||| |||||||||||||||||||| |||||    
T  28234529 acaagggaatccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcat 28234628  T
Q  397 tcctgtgttttctatcaactatgcctcttcttcat 431  Q
    |||||| || |||||||| ||||| ||||||||||    
T  28234629 tcctgtcttgtctatcaattatgcttcttcttcat 28234663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 245 - 431
Target Start/End: Original strand, 28242717 - 28242903
Alignment:
Q  245 ggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtgggg 344  Q
    |||||||| |||||| | |||||||||||  |||||||||| | ||||  ||| |||||||| | |||||||||||||||| | || || | | | || |    
T  28242717 ggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaagaagggaattcgcaccttcattgatgacagagaacttccaggaggtg 28242816  T
Q  345 ataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    | ||||| | |||||||||   ||| |||||||||||||||||||| ||||||||||| || |||||||| ||||| ||||||||||    
T  28242817 acaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcat 28242903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 188 - 431
Target Start/End: Original strand, 28185222 - 28185465
Alignment:
Q  188 tcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaagg 287  Q
    |||||||||||||| || |||||| ||||||| ||  | |||||||| ||||| || |||||||| |||||| |  ||||||||||  ||||| | |  |    
T  28185222 tcctcatcctcttccttctcctatggattcacctatgacgtgttccttagctttagaggtagtgacactcgttatcgttttactggaaatctcaatagag 28185321  T
Q  288 ctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctag 387  Q
    |||||  | ||||||||||||  |||||||| |||||| | ||||| ||| | || ||  |||| | | |||||||   ||| |||||||||||||||||    
T  28185322 ctctttgtgacaagggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctag 28185421  T
Q  388 gatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    ||| |||||||| || || |||||||| ||||| ||||||||||    
T  28185422 gattttcattcccgtcttgtctatcaattatgcttcttcttcat 28185465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 429
Target Start/End: Original strand, 28139367 - 28139638
Alignment:
Q  158 ttctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactc 257  Q
    ||||| ||| |||||||| |||||  |||||| || ||  |||| || |||||| | ||||| ||| | || || ||||||||||| || ||||| ||||    
T  28139367 ttctctattttcatggctttgcaaccaccttcttcttctacttctttctcctatggcttcacatacgatgtctttctcagcttcagaggcagtgacactc 28139466  T
Q  258 gtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacc 357  Q
    ||  |||||| |||||  |||||||||| ||||||  | ||   ||||||||||| || ||||||||  | ||||| ||| | || ||  ||||   |||    
T  28139467 gtttcggtttcactggaaatctctacaaagctcttcgtgactgtggaatccacacttttattgatgatagggagcttcaaggaggtgacgaaatatcacc 28139566  T
Q  358 atcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttc 429  Q
     |||||||  || ||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  28139567 gtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttcttc 28139638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 431
Target Start/End: Original strand, 28180970 - 28181213
Alignment:
Q  188 tcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaagg 287  Q
    |||||||||||||| || |||||| ||||||| ||  | | |||||| ||||| || ||| |||| |||||| | |||||||||||  ||||| | |  |    
T  28180970 tcctcatcctcttccttctcctatggattcacctatgacgcgttccttagctttagaggtggtgacactcgttatggttttactggaaatctcaatagag 28181069  T
Q  288 ctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctag 387  Q
    |||||  | ||||||||||||  |||||||| |||||| | ||||| ||| | || ||  |||| | | |||||||   ||| |||||||||||||||||    
T  28181070 ctctttgtgacaagggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaagagtctag 28181169  T
Q  388 gatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    ||| |||||||| || || |||||||| ||||| ||||||||||    
T  28181170 gattttcattcccgtcttgtctatcaattatgcttcttcttcat 28181213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 431
Target Start/End: Original strand, 25579613 - 25579818
Alignment:
Q  226 agtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgac 325  Q
    |||||||||||| ||||| || ||||| ||||| |||  |||||| ||  ||||||| |||||||||  | |||||||||| |  |||||| |||||||     
T  25579613 agtgttcctcagtttcagaggcagtgacactcgcaacacttttaccggtaatctctataaggctcttgttgacaagggaattcgtaccttctttgatgat 25579712  T
Q  326 cgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctctt 425  Q
      ||| || ||||| || ||| |||||| ||||||||| | ||| ||||||||||| |||||||| || |||||  | ||||||  ||||||||| ||||    
T  25579713 aatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgccaactatgcatctt 25579812  T
Q  426 cttcat 431  Q
    ||||||    
T  25579813 cttcat 25579818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 431
Target Start/End: Original strand, 25481636 - 25481841
Alignment:
Q  226 agtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgac 325  Q
    |||||||||||  |||||||| ||||| ||||| |||  |||||| ||  ||||||| |||||||||  | |||||||||| |  || |||||||||||     
T  25481636 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgaa 25481735  T
Q  326 cgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctctt 425  Q
      ||| || ||||| || ||| |||||| ||||||||| | ||| ||||||||||| |||||||| |  |||||  | ||||||  ||||||||| ||||    
T  25481736 aatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttgtattcccatattttctgccaactatgcatctt 25481835  T
Q  426 cttcat 431  Q
    ||||||    
T  25481836 cttcat 25481841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 431
Target Start/End: Original strand, 26142759 - 26142964
Alignment:
Q  226 agtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgac 325  Q
    |||||||||||| |||||||| ||||| ||||| |||   ||||| ||  ||||||| |||||||||  | |||||||||| |  || |||||||||||     
T  26142759 agtgttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgat 26142858  T
Q  326 cgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctctt 425  Q
      ||| ||  |||| || ||| |||||| ||||||||| | ||| ||||||||||| |||||||| || |||||  | ||||||  ||||||||| ||||    
T  26142859 aatgatcttgaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgccaactatgcatctt 26142958  T
Q  426 cttcat 431  Q
    ||||||    
T  26142959 cttcat 26142964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 244 - 426
Target Start/End: Complemental strand, 25507178 - 25507002
Alignment:
Q  244 gggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggg 343  Q
    |||||| || ||||||| | |||||||| |||||||||||| ||||||   | |||||||||| ||||      |||||||  |||| ||| |||| ||     
T  25507178 gggtagcgacactcgtagccgttttactagccatctctacacggctctatatgacaagggaattcaca------ttgatgattgtgatctgaaaagagga 25507085  T
Q  344 gataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttc 426  Q
    ||| |||||| ||||||| ||| ||  ||||||||||| |||||||| || ||||| ||  ||||||||||||||||||||||    
T  25507084 gatgaaatcacaccatcagtcgtcatcgccattgaagaatctaggatttttattccggttctttctatcaactatgcctcttc 25507002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 194 - 429
Target Start/End: Original strand, 28325343 - 28325578
Alignment:
Q  194 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctctta 293  Q
    |||||||| ||||||||| ||||||| ||  | |||||||| || || || |||||||| |||||| | |||||||||||  |||||||||| | ||||     
T  28325343 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatcttt 28325442  T
Q  294 ctaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatctt 393  Q
     ||  ||| |||| |  |||||||||||||||   || || ||| | || ||  |||| | ||| |||||   ||| |||||||||||||||||||| ||    
T  28325443 gtaggaagagaattcgtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggatttt 28325542  T
Q  394 cattcctgtgttttctatcaactatgcctcttcttc 429  Q
    ||||||| | || |||||||| ||||| ||||||||    
T  28325543 cattcctattttgtctatcaattatgcttcttcttc 28325578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 27427963 - 27427886
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctca 236  Q
    |||||||||||||||| ||||||||||||| ||  ||||||||||||||||||  ||||| |||| | ||||||||||    
T  27427963 tctcaattctcatggccatgcaattacctttctattcctcttcattttcctatgcattcagttacgatgtgttcctca 27427886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 431
Target Start/End: Original strand, 28226845 - 28227049
Alignment:
Q  227 gtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgacc 326  Q
    |||||||| || || || |||| ||| |||||| | |||||||||||  |||||||||  | ||||  ||| |||||||| ||||| ||| |||||||      
T  28226845 gtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctacagtgatctttgtaagaagggaattcacacattctttgatgata 28226944  T
Q  327 gtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttc 426  Q
    | ||||| ||| | || ||| |||| | | |||||||   ||| | ||||||||| |||||||| ||||||||||| || |||||||| ||||| |||||    
T  28226945 gagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattatgcttcttc 28227044  T
Q  427 ttcat 431  Q
    |||||    
T  28227045 ttcat 28227049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 431
Target Start/End: Original strand, 26055820 - 26056025
Alignment:
Q  226 agtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgac 325  Q
    |||||||||||  |||||||| ||||| ||||| |||  |||||| ||  ||||||| |||||||||  | ||||||||||  | || |||||||||||     
T  26055820 agtgttcctcattttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaa 26055919  T
Q  326 cgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctctt 425  Q
      ||| || ||||| || ||| |||||| | ||||||| | ||| ||||| ||||| ||| |||| || |||||  | ||||||  ||||||||| ||||    
T  26055920 aatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgccaactatgcatctt 26056019  T
Q  426 cttcat 431  Q
    ||||||    
T  26056020 cttcat 26056025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 431
Target Start/End: Original strand, 26075790 - 26075995
Alignment:
Q  226 agtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgac 325  Q
    |||||||||||  |||||||| ||||| ||||| |||  |||||| ||  ||||||| |||||||||  | ||||||||||  | || |||||||||||     
T  26075790 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaa 26075889  T
Q  326 cgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctctt 425  Q
      ||| || ||||| || ||| |||||| | ||||||| | ||| ||||| ||||| ||| |||| || |||||  | ||||||  ||||||||| ||||    
T  26075890 aatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgccaactatgcatctt 26075989  T
Q  426 cttcat 431  Q
    ||||||    
T  26075990 cttcat 26075995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 26018836 - 26018759
Alignment:
Q  170 atggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggt 247  Q
    |||||||| |||| |||||| ||  |||| || ||||||||| || |||| |||||||||||||||| ||||||||||    
T  26018836 atggctattcaatcaccttcgtctacctcatccttttcctatggactcacataccaagtgttcctcaacttcaggggt 26018759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 26139540 - 26139463
Alignment:
Q  170 atggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggt 247  Q
    |||| ||| |||| |||||||||  |||| || ||||||||| || |||| |||||||||||||||| ||||||||||    
T  26139540 atggttattcaatcaccttcctctacctcatccttttcctatggactcacataccaagtgttcctcaacttcaggggt 26139463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 431
Target Start/End: Original strand, 28149912 - 28150036
Alignment:
Q  306 tccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgtt 405  Q
    |||||||||||||||||||    |||||  || | |||||  |||||| ||||||||||  ||| |||||||||||||| ||||| ||||||||  | ||    
T  28149912 tccacaccttcattgatgatacggagctttaacgaggggacgaaatcacaccatcactct-caaggccattgaagagtccaggattttcattccaatctt 28150010  T
Q  406 ttctatcaactatgcctcttcttcat 431  Q
     |||||||||||| | ||||||||||    
T  28150011 ctctatcaactatacttcttcttcat 28150036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 429
Target Start/End: Complemental strand, 26342143 - 26342024
Alignment:
Q  310 caccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttct 409  Q
    |||||||||||||||  | ||||| ||  | || || ||||||| || |||||| | ||| |||||||||||||| ||||| ||||||||  | || ||     
T  26342143 caccttcattgatgatagggagcttcatggaggtgacaaaatcacacaatcacttgtcaaagccattgaagagtccaggattttcattccaattttctca 26342044  T
Q  410 atcaactatgcctcttcttc 429  Q
    ||||||||||| ||||||||    
T  26342043 atcaactatgcttcttcttc 26342024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 325
Target Start/End: Complemental strand, 27665358 - 27665311
Alignment:
Q  278 ctctacaaggctcttactaacaagggaatccacaccttcattgatgac 325  Q
    ||||| ||||||||| || |||| ||||||||||||||||||||||||    
T  27665358 ctctataaggctctttctgacaaaggaatccacaccttcattgatgac 27665311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 431
Target Start/End: Complemental strand, 28297859 - 28297801
Alignment:
Q  373 cattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    |||||||||| ||||||| ||||||||||| || |||| ||| ||||| ||||||||||    
T  28297859 cattgaagagactaggattttcattcctgtcttatctaccaattatgcttcttcttcat 28297801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 28514214 - 28514272
Alignment:
Q  373 cattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    |||||||||| ||||||| ||||||||||| || |||| ||| ||||| ||||||||||    
T  28514214 cattgaagagactaggattttcattcctgtcttatctaccaattatgcttcttcttcat 28514272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 429
Target Start/End: Original strand, 29825958 - 29826124
Alignment:
Q  263 ggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcac 362  Q
    |||||||| ||| |||||||||| ||||| ||| |||||  ||| | ||||||||||||||||   ||||| ||||| |||||  |||||| ||| ||||    
T  29825958 ggttttaccggcaatctctacaaagctctaactgacaagaaaattcgcaccttcattgatgacaaagagcttcaaagaggggacgaaatcacaccctcac 29826057  T
Q  363 tcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttc 429  Q
    | |  || || ||| |||| ||||||||   ||||||| | || |||| ||| ||||| ||||||||    
T  29826058 ttgtgaaggcaattcaagaatctaggatagccattcctattttctctaccaattatgcttcttcttc 29826124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 25071485 - 25071518
Alignment:
Q  164 attctcatggctatgcaattaccttcctcatcct 197  Q
    |||||||||||||||||||||||||| |||||||    
T  25071485 attctcatggctatgcaattaccttcttcatcct 25071518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 431
Target Start/End: Original strand, 26048739 - 26048944
Alignment:
Q  226 agtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgac 325  Q
    |||||||||||| |||||||| ||||| ||||| |||  |||||| ||  ||||||| |||||||| | | ||||||||||    || |||||||||||     
T  26048739 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgat 26048838  T
Q  326 cgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctctt 425  Q
      ||| ||  |||| || ||| |||||| |||   ||| | ||| ||||| ||||| |||||||| || |||||  | ||||||  ||||||||| ||||    
T  26048839 aatgatcttgaaagaggagatgaaatcacacccaaacttgtcaaggccatggaagaatctaggatttttattcccatattttctgccaactatgcatctt 26048938  T
Q  426 cttcat 431  Q
    ||||||    
T  26048939 cttcat 26048944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 431
Target Start/End: Original strand, 26069908 - 26070113
Alignment:
Q  226 agtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgac 325  Q
    |||||||||||| |||||||| ||||| ||||| |||  |||||| ||  ||||||| |||||||| | | ||||||||||    || |||||||||||     
T  26069908 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgat 26070007  T
Q  326 cgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctctt 425  Q
      ||| ||  |||| || ||| |||||| |||   ||| | ||| ||||| ||||| |||||||| || |||||  | ||||||  ||||||||| ||||    
T  26070008 aatgatcttgaaagaggagatgaaatcacacccaaacttgtcaaggccatggaagaatctaggatttttattcccatattttctgccaactatgcatctt 26070107  T
Q  426 cttcat 431  Q
    ||||||    
T  26070108 cttcat 26070113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 159 - 431
Target Start/End: Complemental strand, 3782 - 3509
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||| |||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || || ||||| | ||| |||||    
T  3782 tctcaattgtcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcg 3683  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||  |||||||||||||||||||| ||||||||||||| |||||||||||||||  ||| || ||||| || ||| |||||| ||||    
T  3682 gcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacacca 3583  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaa-ctatgcctcttcttcat 431  Q
    ||||||  ||| |||||||| || |||||||| || |||||||||||||||||||| |||||||||||||||||    
T  3582 tcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaacctatgcctcttcttcat 3509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 159 - 422
Target Start/End: Complemental strand, 14715 - 14452
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||||||| |||| || ||||| | ||| |||||    
T  14715 tctcaattctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcg 14616  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||  |||||||||||||||||||| ||||||||||||| |||||||||||||||  ||| || ||||| || ||| |||||| ||||    
T  14615 gcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacacca 14516  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcct 422  Q
    ||||||  ||| |||||||| || |||||||| || ||||||||||||||||||||||||||||    
T  14515 tcactcctcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcct 14452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 8161 - 8074
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcagggg 246  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| ||| || ||||||||||||||||||||||||| || |||||    
T  8161 tctcaattctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttagggg 8074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 159 - 426
Target Start/End: Complemental strand, 13992 - 13725
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||||||||||||| || ||||| | ||| |||||    
T  13992 tctcaattatcatggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcg 13893  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||| |||||||||||||||||||| ||||||||||| | |||||||||||||||  ||| || ||||| || ||| |||||| ||||    
T  13892 ccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacacca 13793  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttc 426  Q
    ||||||  ||| ||||| ||||| |||||||| || ||||||||||||||||||||||| ||| ||||    
T  13792 tcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttc 13725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 159 - 429
Target Start/End: Complemental strand, 5031 - 4761
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||||| |||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| | ||| |||||    
T  5031 tctcaattcttatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcg 4932  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||  |||||||||||||||||||| ||||||||||| | |||||||||||||||  ||| || ||||| || ||| |||||| ||||    
T  4931 ccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacacca 4832  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttc 429  Q
    || |||  ||| |||||||| || |||||||| || ||||||||||||||||||  |||||||| ||||||    
T  4831 tccctccgcaaggccattgatgaatctaggatttttattcctgtgttttctatcttctatgccttttcttc 4761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 159 - 426
Target Start/End: Complemental strand, 277 - 10
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||||| |||  ||||||||||||||||||||| || || ||||| | ||| |||||    
T  277 tctcaattctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcg 178  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||| |||||||||||||||||||| ||||||||||| | |||||||||||||||  ||| || ||||| || ||| |||||| ||||    
T  177 ccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacacca 78  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttc 426  Q
    ||||||  ||| ||||| ||||| |||||||| || ||||||||||||||||||||||| ||| ||||    
T  77 tcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttc 10  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 159 - 426
Target Start/End: Original strand, 7352 - 7619
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcg 258  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||||| |||  ||||||||||||||||||||| || || ||||| | ||| |||||    
T  7352 tctcaattctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcg 7451  T
Q  259 taacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaacca 358  Q
      |||||||||| ||| |||||||||||||||||||| ||||||||||| | |||||||||||||||  ||| || ||||| || ||| |||||| ||||    
T  7452 ccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacacca 7551  T
Q  359 tcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttc 426  Q
    ||||||  ||| ||||| ||||| |||||||| || ||||||||||||||||||||||| ||| ||||    
T  7552 tcactcctcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttc 7619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 297 - 431
Target Start/End: Original strand, 34690 - 34824
Alignment:
Q  297 acaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcat 396  Q
    ||||||||||||||||||||||||||||| | ||||| ||| | || ||| |||| | |||||||||   ||| |||||||||||||||||||| |||||    
T  34690 acaagggaatccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcat 34789  T
Q  397 tcctgtgttttctatcaactatgcctcttcttcat 431  Q
    |||||| || |||||||| ||||| ||||||||||    
T  34790 tcctgtcttgtctatcaattatgcttcttcttcat 34824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 245 - 431
Target Start/End: Original strand, 42879 - 43065
Alignment:
Q  245 ggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtgggg 344  Q
    |||||||| |||||| | |||||||||||  |||||||||| | ||||  ||| |||||||| | |||||||||||||||| | || || | | | || |    
T  42879 ggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaagaagggaattcgcaccttcattgatgacagagaacttccaggaggtg 42978  T
Q  345 ataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    | ||||| | |||||||||   ||| |||||||||||||||||||| ||||||||||| || |||||||| ||||| ||||||||||    
T  42979 acaaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcat 43065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 194 - 429
Target Start/End: Original strand, 116658 - 116893
Alignment:
Q  194 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctctta 293  Q
    |||||||| ||||||||| ||||||| ||  | |||||||| || || || |||||||| |||||| | |||||||||||  |||||||||| | ||||     
T  116658 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatcttt 116757  T
Q  294 ctaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatctt 393  Q
     ||  ||| |||| |  |||||||||||||||   || || ||| | || ||  |||| | ||| |||||   ||| |||||||||||||||||||| ||    
T  116758 gtaggaagagaattcgtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggatttt 116857  T
Q  394 cattcctgtgttttctatcaactatgcctcttcttc 429  Q
    ||||||| | || |||||||| ||||| ||||||||    
T  116858 cattcctattttgtctatcaattatgcttcttcttc 116893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 431
Target Start/End: Original strand, 27343 - 27547
Alignment:
Q  227 gtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctcttactaacaagggaatccacaccttcattgatgacc 326  Q
    |||||||| || || || |||| ||| |||||| | |||||||||||  |||||||||  | ||||  ||| |||||||| ||||| ||| |||||||      
T  27343 gtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctacagtgatctttgtaagaagggaattcacacattctttgatgata 27442  T
Q  327 gtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttc 426  Q
    | ||||| ||| | || ||| |||| | | |||||||   ||| | ||||||||| |||||||| ||||||||||| || |||||||| ||||| |||||    
T  27443 gagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattatgcttcttc 27542  T
Q  427 ttcat 431  Q
    |||||    
T  27543 ttcat 27547  T

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Target: scaffold0019 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 431
Target Start/End: Complemental strand, 58607 - 58370
Alignment:
Q  194 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggtagtgatactcgtaacggttttactggccatctctacaaggctctta 293  Q
    |||||||| || |||||| ||||||| || || |||||||| ||||| || ||| |||| |||||  | |||||||||||  |||||||||  ||||||     
T  58607 tcctcttccttctcctatggattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactggaaatctctacagagctcttt 58508  T
Q  294 ctaacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggataaaatcaaaccatcactcgacaatgccattgaagagtctaggatctt 393  Q
     | ||||||||||||  |||||||| |||||| | ||||| ||| | || ||  |||| | |||||||||   ||| |||||| ||||||||||||| ||    
T  58507 gtgacaagggaatccgaaccttcatggatgacagagagcttcaaggaggtgacgaaataacaccatcacttttcaaggccattaaagagtctaggatttt 58408  T
Q  394 cattcctgtgttttctatcaactatgcctcttcttcat 431  Q
    |||||| || || |||||||||||||| ||||||||||    
T  58407 cattcccgtcttgtctatcaactatgcttcttcttcat 58370  T

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Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 59400 - 59477
Alignment:
Q  159 tctcaattctcatggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctca 236  Q
    |||||||||||||||| ||||||||||||| ||  ||||||||||||||||||  ||||| |||| | ||||||||||    
T  59400 tctcaattctcatggccatgcaattacctttctattcctcttcattttcctatgcattcagttacgatgtgttcctca 59477  T

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Target: scaffold0713 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 5916 - 5993
Alignment:
Q  170 atggctatgcaattaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggt 247  Q
    |||| ||| |||| |||||||||  |||| || ||||||||| || |||| |||||||||||||||| ||||||||||    
T  5916 atggttattcaatcaccttcctctacctcatccttttcctatggactcacataccaagtgttcctcaacttcaggggt 5993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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