View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_27 (Length: 430)

Name: NF3229_low_27
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_27
NF3229_low_27
[»] chr6 (13 HSPs)
chr6 (1-319)||(7815396-7815714)
chr6 (216-352)||(14435615-14435751)
chr6 (181-314)||(7872237-7872370)
chr6 (220-352)||(7818293-7818425)
chr6 (327-405)||(7814905-7814983)
chr6 (194-383)||(7860847-7861036)
chr6 (218-297)||(7819985-7820064)
chr6 (213-303)||(7805778-7805868)
chr6 (213-393)||(3254903-3255083)
chr6 (222-356)||(10416407-10416541)
chr6 (277-345)||(15399195-15399263)
chr6 (277-345)||(15410982-15411050)
chr6 (270-352)||(14438328-14438410)
[»] chr1 (4 HSPs)
chr1 (213-393)||(37996609-37996789)
chr1 (216-317)||(28720076-28720177)
chr1 (218-306)||(49170495-49170580)
chr1 (230-306)||(49179546-49179619)
[»] scaffold1377 (1 HSPs)
scaffold1377 (216-314)||(1365-1463)
[»] scaffold1089 (1 HSPs)
scaffold1089 (219-352)||(644-777)
[»] chr5 (4 HSPs)
chr5 (182-315)||(14308526-14308659)
chr5 (276-339)||(24005041-24005104)
chr5 (217-315)||(25614304-25614405)
chr5 (217-344)||(31262397-31262524)
[»] chr4 (2 HSPs)
chr4 (219-315)||(14018654-14018750)
chr4 (213-300)||(51016540-51016627)
[»] chr3 (1 HSPs)
chr3 (220-339)||(2467550-2467669)
[»] chr7 (1 HSPs)
chr7 (272-352)||(19316676-19316756)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 7815714 - 7815396
Alignment:
Q  1 ctaccatatatgttgtctgaactaacaaactaaatagttgcaacatatttagaatataaactaatgaaaaaaccgacaattctagtaactatactcattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7815714 ctaccatatatgttgtctgaactaacaaactaaatagttgcaacatatttagaatataaactaatgaaaaaaccgacaattctagtaactatactcattc 7815615  T
Q  101 aaatgaaagtttacatcctaaagatatccttggccagcaggtcaatacttcttgaatcctacnnnnnnnccaagtactgctagtagtaatgctgattttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||  | |||||||||||||||||||||    
T  7815614 aaatgaaagtttacatcctaaagatatccttggccagcaggtcaatacttcttgaatcctactttttttccaagttgttctagtagtaatgctgattttc 7815515  T
Q  201 atgttctgcaagagactcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgag 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7815514 atgtcctgcaagagactcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgag 7815415  T
Q  301 atgaaacacattcaataac 319  Q
    |||||||||||||||||||    
T  7815414 atgaaacacattcaataac 7815396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 216 - 352
Target Start/End: Original strand, 14435615 - 14435751
Alignment:
Q  216 ctcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacattcaa 315  Q
    |||||||||||||| |||||||||| |||| |||| |||||| |||| ||||  ||||||||||| |||||||||||||||||||| |||||||||||||    
T  14435615 ctcgcattctgcaatatatattttgcaaattgaaggtcatttgccgatccttcaaagtttaaaattgtacatgatctgaggtgagacgaaacacattcaa 14435714  T
Q  316 taaccgaggatgggcatttccatttcttggatgagct 352  Q
    |||||||   ||| |||||||||| ||||||||||||    
T  14435715 taaccgaatttggccatttccattccttggatgagct 14435751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 7872370 - 7872237
Alignment:
Q  181 tagtagtaatgctgattttcatgttctgcaagagactcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaat 280  Q
    ||||||||| || |||||||||||  |  || ||||  |||||||||||||||||| ||| |||||||||||||||| | ||||| || |||||||||||    
T  7872370 tagtagtaacgccgattttcatgtcttctaaaagacctgcattctgcaaaatatatgttgcaaatcgaagatcatttgctgagccatggaagtttaaaat 7872271  T
Q  281 agtacatgatctgaggtgagatgaaacacattca 314  Q
    |||||||||||| |||||||| ||||||||||||    
T  7872270 agtacatgatctaaggtgagacgaaacacattca 7872237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 220 - 352
Target Start/End: Complemental strand, 7818425 - 7818293
Alignment:
Q  220 cattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacattcaataac 319  Q
    |||||| |||||||||| ||||||||||||||| ||||  | ||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||| |||    
T  7818425 cattcttcaaaatatatgttgtaaatcgaagataatttatcaagccttgaaagtttaaaatagtacatgatttgaggttagacgaaacacattcaagaac 7818326  T
Q  320 cgaggatgggcatttccatttcttggatgagct 352  Q
    | |   | || ||||||||| ||||||||||||    
T  7818325 caaaatttggtatttccattccttggatgagct 7818293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 327 - 405
Target Start/End: Complemental strand, 7814983 - 7814905
Alignment:
Q  327 gggcatttccatttcttggatgagcttgtatacttcgactgtcaaggagataaaaaacaacatttatacaaaatttatg 405  Q
    ||||||||||||| ||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  7814983 gggcatttccattccttggataaggttgtattcttcgactgtcaaggagataaaaaacaacatttatacaaaatatatg 7814905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 383
Target Start/End: Complemental strand, 7861036 - 7860847
Alignment:
Q  194 gattttcatgttctgcaagagactcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctg 293  Q
    |||||||||||   | |||||| | |||||||||||||||||||||  ||||  ||||||||||  ||||||||| ||||||| || | |||||||||||    
T  7861036 gattttcatgtctcgtaagagagttgcattctgcaaaatatattttacaaatttaagatcatttgtcgagccttgaaagtttagaacaatacatgatctg 7860937  T
Q  294 aggtgagatgaaacacattcaataaccgaggatgggcatttccatttcttggatgagcttgtatacttcgactgtcaaggagataaaaaa 383  Q
    |||||||| ||||  |||| |  ||||||   |||||||||||||| ||||| |||||| |||| | || |||||| | |||||||||||    
T  7860936 aggtgagacgaaatgcatttaggaaccgaaattgggcatttccattccttggttgagctggtattcatccactgtccaagagataaaaaa 7860847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 7819985 - 7820064
Alignment:
Q  218 cgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggt 297  Q
    ||||||||  |||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  7819985 cgcattctttaaaacatattttgcaaatcgaagatcattttccgagccttcaaagtttaaaatagtacatgatctgaggt 7820064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 7805778 - 7805868
Alignment:
Q  213 agactcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatg 303  Q
    |||||| ||||||  ||||||||||||| ||||||||||||||| |||||||| |  |||||||||||||||||||||||||||| |||||    
T  7805778 agactcccattctttaaaatatattttgcaaatcgaagatcattatccgagccgtcaaagtttaaaatagtacatgatctgaggttagatg 7805868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 393
Target Start/End: Original strand, 3254903 - 3255083
Alignment:
Q  213 agactcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacatt 312  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| ||||| | |  | ||||||||| ||||||||| ||||||| ||  |||||||||    
T  3254903 agactcgcattctgcaaaatatattttgcaaattgaagatcatttgccgaggcatcaaggtttaaaatggtacatgatgtgaggtgtgacaaaacacatt 3255002  T
Q  313 caataaccgaggatgggcatttccatttcttggatgagcttgtatacttcgactgtcaaggagataaaaaacaacatttat 393  Q
    ||  ||| ||   ||||||||| |||||| |||| ||||| || | | || |||||||    ||||||||| |||||||||    
T  3255003 catgaacagaaattgggcatttgcatttcctggacgagctggtctccatccactgtcagaaggataaaaaataacatttat 3255083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 356
Target Start/End: Complemental strand, 10416541 - 10416407
Alignment:
Q  222 ttctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacattcaataaccg 321  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||| |  |||||||| |||||||||||||| |||| ||| ||| | ||||||| ||||     
T  10416541 ttctgtaaaatatattttgcaaattgaagatcattttccgagccatcgaagtttaatatagtacatgatctaaggttagacgaatcccattcaagaacca 10416442  T
Q  322 aggatgggcatttccatttcttggatgagcttgta 356  Q
    |   |||| ||||||||| || |||| ||||||||    
T  10416441 aaattgggtatttccattcctcggataagcttgta 10416407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 15399263 - 15399195
Alignment:
Q  277 aaatagtacatgatctgaggtgagatgaaacacattcaataaccgaggatgggcatttccatttcttgg 345  Q
    |||||||||||||| |||| ||| | ||||||||||||| ||||||  |||||||| |||||| |||||    
T  15399263 aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatgtccattccttgg 15399195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 15411050 - 15410982
Alignment:
Q  277 aaatagtacatgatctgaggtgagatgaaacacattcaataaccgaggatgggcatttccatttcttgg 345  Q
    |||||||||||||| |||| ||| | ||||||||||||| ||||||  |||||||| |||||| |||||    
T  15411050 aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatgtccattccttgg 15410982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 14438328 - 14438410
Alignment:
Q  270 aagtttaaaatagtacatgatctgaggtgagatgaaacacattcaataaccgaggatgggcatttccatttcttggatgagct 352  Q
    ||||||||||| ||||| |||||||||||| | |||||||| |||  ||||||   |||| ||||||||| ||||||| ||||    
T  14438328 aagtttaaaattgtacaggatctgaggtgaaacgaaacacactcaggaaccgaatttgggtatttccattccttggataagct 14438410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 213 - 393
Target Start/End: Original strand, 37996609 - 37996789
Alignment:
Q  213 agactcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacatt 312  Q
    ||||| ||||| |||||||||||| ||| ||||||||||||||   |||||||||  ||||||||||||||||||||||| |||||||| |||| ||| |    
T  37996609 agacttgcattatgcaaaatatatcttgcaaatcgaagatcatccgccgagccttcaaagtttaaaatagtacatgatcttaggtgagacgaaatacact 37996708  T
Q  313 caataaccgaggatgggcatttccatttcttggatgagcttgtatacttcgactgtcaaggagataaaaaacaacatttat 393  Q
    ||| ||| |    |||||||||||||| |||||||||| | || | | || |||||||| |  |||||||| |||||||||    
T  37996709 caagaactgcaactgggcatttccattccttggatgagttggtctccgtccactgtcaaaggaataaaaaataacatttat 37996789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 216 - 317
Target Start/End: Original strand, 28720076 - 28720177
Alignment:
Q  216 ctcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacattcaa 315  Q
    ||||||||||||| |||||| |||| |||||| |||||||||||||||||||  || ||||||||||||||||| |||||||||||   |||||||||||    
T  28720076 ctcgcattctgcagaatatactttgcaaatcggagatcattttccgagccttcaaaatttaaaatagtacatgacctgaggtgagactcaacacattcaa 28720175  T
Q  316 ta 317  Q
    ||    
T  28720176 ta 28720177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 218 - 306
Target Start/End: Original strand, 49170495 - 49170580
Alignment:
Q  218 cgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaa 306  Q
    ||||||||||||||||||||||| |||| |||| |||| |||| ||||||   |||||   |||||||||||| |||||||||||||||    
T  49170495 cgcattctgcaaaatatattttgcaaattgaagttcatcttccaagccttcatagttt---atagtacatgatatgaggtgagatgaaa 49170580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 49179619 - 49179546
Alignment:
Q  230 aatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaa 306  Q
    ||||||||||||||||||||| |||| ||||  |||||   |||||   ||||||||||||||||||||||| ||||    
T  49179619 aatatattttgtaaatcgaagttcatcttcccggccttcatagttt---atagtacatgatctgaggtgagacgaaa 49179546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1377 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 1365 - 1463
Alignment:
Q  216 ctcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacattca 314  Q
    ||||||||||||||||||||| ||| ||||||||||| |||  |||||||||  ||||||||||| ||||| |||||||||||||| ||||||||||||    
T  1365 ctcgcattctgcaaaatatatgttgcaaatcgaagattattggccgagccttcaaagtttaaaattgtacaggatctgaggtgagaggaaacacattca 1463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 352
Target Start/End: Original strand, 644 - 777
Alignment:
Q  219 gcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacattcaataa 318  Q
    |||||||||| ||||||| ||| |||| |||| | |||  |||| ||||  ||||||||||| |||||||||||||||||||| ||||||||||||| ||    
T  644 gcattctgcagaatatatgttgcaaatagaaggttattagccgatccttcaaagtttaaaattgtacatgatctgaggtgagacgaaacacattcaagaa 743  T
Q  319 ccgaggatgggcatttccatttcttggatgagct 352  Q
    ||||   ||| |||||||||| ||||||||||||    
T  744 ccgaatttggccatttccattccttggatgagct 777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 182 - 315
Target Start/End: Complemental strand, 14308659 - 14308526
Alignment:
Q  182 agtagtaatgctgattttcatgttctgcaagagactcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaata 281  Q
    |||||||||| ||||| ||||||  |||||  | || || ||||||||||||||| ||| |||||||||||||||| |  ||| ||| ||||||||||||    
T  14308659 agtagtaatgttgattgtcatgtcttgcaaacgtcttgcgttctgcaaaatatatgttgcaaatcgaagatcatttccatagcattgaaagtttaaaata 14308560  T
Q  282 gtacatgatctgaggtgagatgaaacacattcaa 315  Q
    ||||||||||||||||| ||  ||||||||||||    
T  14308559 gtacatgatctgaggtgtgacaaaacacattcaa 14308526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 24005041 - 24005104
Alignment:
Q  276 aaaatagtacatgatctgaggtgagatgaaacacattcaataaccgaggatgggcatttccatt 339  Q
    |||||||||||||||||||||||||| ||||||||||||  ||||||   ||||||||||||||    
T  24005041 aaaatagtacatgatctgaggtgagaagaaacacattcaggaaccgaaattgggcatttccatt 24005104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 25614405 - 25614304
Alignment:
Q  217 tcgcattctgcaaaatatattttgtaaatcgaagatcattt---tccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacattc 313  Q
    |||||||||||||||||||||| | |||||  |||||| |    ||| || ||| ||||||||||||||||||||| ||||||||| | |||| ||||||    
T  25614405 tcgcattctgcaaaatatatttagcaaatcctagatcactactgtcccagtcttctaagtttaaaatagtacatgacctgaggtgacacgaaatacattc 25614306  T
Q  314 aa 315  Q
    ||    
T  25614305 aa 25614304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 344
Target Start/End: Complemental strand, 31262524 - 31262397
Alignment:
Q  217 tcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacattcaat 316  Q
    |||||||||||||||||||| | | |||||| | ||||| | |||||||||  |||| ||| ||||||||||| || | |||| | |||| ||||||||     
T  31262524 tcgcattctgcaaaatatatgtagcaaatcgcatatcatctgccgagcctttgaagtctaatatagtacatgacctcaagtgacacgaaatacattcaag 31262425  T
Q  317 aaccgaggatgggcatttccatttcttg 344  Q
    | || |   |||||||||||||| ||||    
T  31262424 agccaaaattgggcatttccattccttg 31262397  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 14018750 - 14018654
Alignment:
Q  219 gcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacattcaa 315  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||   |  ||||||||||||||||||||||| || ||||| |||||||||||||    
T  14018750 gcattctgcaaaatgtattttgcaaatcgaagatcatttgccgagttatcaaagtttaaaatagtacatgatctaagatgagacgaaacacattcaa 14018654  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 51016540 - 51016627
Alignment:
Q  213 agactcgcattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgag 300  Q
    |||||||||||| |||| |||||||||  |||||||| | ||| ||   ||||||| |||| |||||||||||||||| |||||||||    
T  51016540 agactcgcattccgcaagatatattttacaaatcgaaaaccatctttgaagccttgaaagtataaaatagtacatgatttgaggtgag 51016627  T

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Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 2467550 - 2467669
Alignment:
Q  220 cattctgcaaaatatattttgtaaatcgaagatcattttccgagccttgtaagtttaaaatagtacatgatctgaggtgagatgaaacacattcaataac 319  Q
    |||||||||| |||||| ||| |||||||||||||||| | || ||||  || |||||||| ||||||||| | |||||||| ||||| ||||||| |||    
T  2467550 cattctgcaatatatatgttgcaaatcgaagatcatttgcagacccttcaaaatttaaaattgtacatgatataaggtgagacgaaacgcattcaagaac 2467649  T
Q  320 cgaggatgggcatttccatt 339  Q
    |||   ||| ||||||||||    
T  2467650 cgaacttggacatttccatt 2467669  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 19316676 - 19316756
Alignment:
Q  272 gtttaaaatagtacatgatctgaggtgagatgaaacacattcaataaccgaggatgggcatttccatttcttggatgagct 352  Q
    ||||||| | ||||||||||| |||||||||||||||||||||| ||| ||   |||||||||||||| ||| ||||||||    
T  19316676 gtttaaagttgtacatgatctaaggtgagatgaaacacattcaagaactgaaattgggcatttccattccttagatgagct 19316756  T

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