View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_29 (Length: 427)
Name: NF3229_low_29
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Complemental strand, 18519974 - 18519571
Alignment:
| Q |
9 |
agcacagatgtataaaagttataagtatatgcacatcttctgattttattctgatgccaatgattgatgaattatttgagattgtaatgtatttatttct |
108 |
Q |
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| T |
18519974 |
agcacaaatgtataaaagttataagtatatgcacatcttctgattttattctgatgccaatgattgatgaattatttgagattgtaatgtatttatttct |
18519875 |
T |
|
| Q |
109 |
tttctttctatactctgcatggagcgtttctgttgcattcagttaccgaacctttggtgttcattcaggatggtgagtggctgtttactataaatttgat |
208 |
Q |
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| T |
18519874 |
tttctttctatactctgcatggagcgtttctgttgcattcagttaccgaacctttggtgttcattcaggatggtgagtggctgtttactataaatttgat |
18519775 |
T |
|
| Q |
209 |
tgaaacttctatatgaagttttaatgctataatctttttatattcatgtgattagcgattaataaattaagatcaaattacagggcatcgatagaaagga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18519774 |
tgaaacttctatatgaagttttaatgctataatctttttatattcatgtgattagcgattaataaattaagatcaaattacagggcatcgatagaaagga |
18519675 |
T |
|
| Q |
309 |
tgtgagaattgtgtgccacttcaatattccaaagtcaatggaagcattctatcaagagtccggcagagctggtcgtgatcaattgccctctacaagtctg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18519674 |
tgtgagaattgtgtgccacttcaatattccaaagtcaatggaagcattctatcaagagtccggcagagctggtcgtgatcaattgccctctacaagtctg |
18519575 |
T |
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| Q |
409 |
ttgt |
412 |
Q |
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|||| |
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| T |
18519574 |
ttgt |
18519571 |
T |
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