View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_32 (Length: 416)

Name: NF3229_low_32
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_32
NF3229_low_32
[»] chr4 (54 HSPs)
chr4 (35-400)||(24686385-24686751)
chr4 (35-157)||(24127452-24127574)
chr4 (223-287)||(25574128-25574192)
chr4 (229-287)||(16298929-16298987)
chr4 (166-234)||(17288619-17288687)
chr4 (86-157)||(6866760-6866832)
chr4 (86-222)||(6872517-6872656)
chr4 (235-287)||(10472511-10472563)
chr4 (235-287)||(11785988-11786040)
chr4 (235-287)||(11798155-11798207)
chr4 (235-287)||(13635725-13635777)
chr4 (235-287)||(49492512-49492564)
chr4 (235-282)||(38010155-38010202)
chr4 (237-282)||(30357823-30357868)
chr4 (235-287)||(1621889-1621941)
chr4 (235-287)||(1729615-1729667)
chr4 (235-287)||(15051136-15051188)
chr4 (235-287)||(30597713-30597765)
chr4 (235-287)||(36011857-36011909)
chr4 (235-287)||(46672453-46672505)
chr4 (223-287)||(50563729-50563792)
chr4 (235-287)||(51921265-51921317)
chr4 (235-287)||(55765495-55765547)
chr4 (167-222)||(1997057-1997112)
chr4 (248-287)||(4168384-4168423)
chr4 (167-222)||(23506382-23506437)
chr4 (248-287)||(26447412-26447451)
chr4 (248-287)||(36621701-36621740)
chr4 (168-230)||(5169305-5169367)
chr4 (168-222)||(16314201-16314255)
chr4 (229-278)||(2848118-2848167)
chr4 (86-131)||(6212415-6212460)
chr4 (173-222)||(17288761-17288810)
chr4 (235-284)||(49426060-49426109)
chr4 (251-287)||(637883-637919)
chr4 (178-222)||(2753075-2753119)
chr4 (255-287)||(6386541-6386573)
chr4 (86-150)||(20674728-20674792)
chr4 (235-287)||(26578189-26578241)
chr4 (235-287)||(27865737-27865789)
chr4 (235-287)||(35291548-35291600)
chr4 (248-288)||(45256001-45256041)
chr4 (248-287)||(22181245-22181284)
chr4 (167-222)||(23504895-23504950)
chr4 (248-287)||(27764266-27764305)
chr4 (248-287)||(29826606-29826645)
chr4 (248-287)||(50643769-50643808)
chr4 (169-222)||(6866693-6866746)
chr4 (166-235)||(44353863-44353932)
chr4 (235-284)||(53441334-53441383)
chr4 (174-222)||(20673565-20673613)
chr4 (174-222)||(20674818-20674866)
chr4 (235-287)||(38244958-38245010)
chr4 (251-287)||(38485674-38485710)
[»] chr6 (24 HSPs)
chr6 (35-222)||(9305621-9305811)
chr6 (223-287)||(18611190-18611254)
chr6 (235-287)||(31216676-31216728)
chr6 (229-284)||(16968026-16968081)
chr6 (235-282)||(30908666-30908713)
chr6 (229-278)||(27079939-27079988)
chr6 (235-287)||(1449556-1449608)
chr6 (235-287)||(1536896-1536948)
chr6 (235-287)||(6900817-6900869)
chr6 (223-275)||(32556346-32556398)
chr6 (232-287)||(4338620-4338675)
chr6 (167-222)||(21383819-21383874)
chr6 (248-287)||(35119261-35119300)
chr6 (168-222)||(25482148-25482202)
chr6 (51-92)||(29454610-29454651)
chr6 (235-287)||(7089096-7089148)
chr6 (248-284)||(33346374-33346410)
chr6 (235-287)||(34870086-34870138)
chr6 (252-287)||(24737691-24737726)
chr6 (248-287)||(29157252-29157291)
chr6 (49-90)||(3120230-3120271)
chr6 (169-222)||(32146093-32146146)
chr6 (248-280)||(12394387-12394419)
chr6 (86-141)||(32146003-32146059)
[»] chr2 (28 HSPs)
chr2 (35-156)||(25648692-25648814)
chr2 (222-284)||(5098717-5098779)
chr2 (229-284)||(39548050-39548105)
chr2 (223-287)||(25995288-25995352)
chr2 (223-287)||(36636937-36637001)
chr2 (87-157)||(18751395-18751466)
chr2 (229-283)||(13081864-13081918)
chr2 (223-287)||(4281788-4281852)
chr2 (229-281)||(40853685-40853737)
chr2 (229-287)||(16142075-16142133)
chr2 (86-140)||(38000467-38000521)
chr2 (229-278)||(24024633-24024682)
chr2 (235-287)||(15016566-15016618)
chr2 (235-287)||(39355049-39355101)
chr2 (248-287)||(18298111-18298150)
chr2 (245-287)||(7487254-7487296)
chr2 (235-283)||(2263587-2263635)
chr2 (235-287)||(8149845-8149897)
chr2 (235-287)||(8154469-8154521)
chr2 (235-287)||(9143599-9143651)
chr2 (178-222)||(30776466-30776510)
chr2 (235-287)||(34464725-34464777)
chr2 (248-287)||(4579818-4579857)
chr2 (235-282)||(18762881-18762928)
chr2 (248-287)||(20709800-20709839)
chr2 (248-287)||(25192918-25192957)
chr2 (51-92)||(4024992-4025033)
chr2 (235-287)||(1292179-1292231)
[»] scaffold0471 (1 HSPs)
scaffold0471 (35-157)||(12058-12180)
[»] chr1 (47 HSPs)
chr1 (35-157)||(49383092-49383213)
chr1 (315-400)||(39539849-39539934)
chr1 (229-287)||(33097413-33097471)
chr1 (229-286)||(51801734-51801791)
chr1 (223-287)||(37639343-37639407)
chr1 (229-287)||(44260526-44260584)
chr1 (235-287)||(11421608-11421660)
chr1 (223-287)||(35198181-35198245)
chr1 (223-278)||(13673893-13673948)
chr1 (223-278)||(20372207-20372262)
chr1 (229-287)||(31529665-31529723)
chr1 (229-287)||(44688610-44688668)
chr1 (223-278)||(13590469-13590524)
chr1 (235-287)||(18618849-18618901)
chr1 (223-287)||(28323332-28323396)
chr1 (223-287)||(34369662-34369726)
chr1 (235-287)||(49936937-49936989)
chr1 (235-287)||(50351817-50351869)
chr1 (224-278)||(5077457-5077511)
chr1 (168-232)||(21747933-21747997)
chr1 (235-287)||(24635940-24635992)
chr1 (223-287)||(51420347-51420410)
chr1 (245-284)||(4097911-4097950)
chr1 (248-287)||(18056810-18056849)
chr1 (245-287)||(25889028-25889070)
chr1 (235-284)||(23175525-23175574)
chr1 (51-95)||(13970886-13970930)
chr1 (248-284)||(16115877-16115913)
chr1 (166-222)||(17240717-17240773)
chr1 (235-287)||(19897760-19897812)
chr1 (235-287)||(20434722-20434774)
chr1 (235-287)||(28375478-28375530)
chr1 (235-287)||(43452556-43452608)
chr1 (235-287)||(48762331-48762383)
chr1 (235-282)||(21256777-21256824)
chr1 (175-222)||(42098737-42098784)
chr1 (49-92)||(44753419-44753462)
chr1 (229-287)||(2741044-2741102)
chr1 (245-287)||(16975978-16976020)
chr1 (166-228)||(17242101-17242163)
chr1 (223-284)||(30788350-30788409)
chr1 (168-222)||(42097326-42097380)
chr1 (168-234)||(43403297-43403363)
chr1 (174-232)||(49383012-49383069)
chr1 (235-284)||(6314129-6314178)
chr1 (248-284)||(22348065-22348101)
chr1 (89-152)||(43403214-43403278)
[»] chr7 (35 HSPs)
chr7 (315-400)||(46346545-46346630)
chr7 (229-284)||(39007652-39007707)
chr7 (229-287)||(34875497-34875555)
chr7 (223-287)||(5757388-5757452)
chr7 (223-283)||(44141255-44141315)
chr7 (223-278)||(6797394-6797449)
chr7 (223-284)||(46346719-46346780)
chr7 (35-91)||(15815557-15815613)
chr7 (235-287)||(16933244-16933296)
chr7 (235-287)||(16938627-16938679)
chr7 (235-287)||(763711-763763)
chr7 (235-287)||(20000674-20000726)
chr7 (223-287)||(27335629-27335692)
chr7 (235-287)||(30884222-30884274)
chr7 (235-287)||(31660083-31660135)
chr7 (235-287)||(41911109-41911161)
chr7 (248-288)||(46024053-46024093)
chr7 (235-287)||(46358534-46358586)
chr7 (167-222)||(21261980-21262035)
chr7 (235-282)||(24359885-24359932)
chr7 (223-278)||(45402879-45402934)
chr7 (168-222)||(12629429-12629483)
chr7 (166-222)||(5769304-5769360)
chr7 (168-228)||(12628027-12628087)
chr7 (248-284)||(15974939-15974975)
chr7 (35-95)||(23455477-23455537)
chr7 (236-284)||(35736963-35737011)
chr7 (168-228)||(47578585-47578645)
chr7 (223-258)||(924427-924462)
chr7 (248-287)||(30428899-30428938)
chr7 (166-223)||(5737176-5737233)
chr7 (51-92)||(23806349-23806390)
chr7 (235-287)||(11732647-11732699)
chr7 (166-222)||(23525581-23525637)
chr7 (248-284)||(48690921-48690957)
[»] chr3 (46 HSPs)
chr3 (316-400)||(28299781-28299865)
chr3 (223-287)||(47728390-47728454)
chr3 (223-287)||(51682002-51682066)
chr3 (223-287)||(28299952-28300016)
chr3 (223-278)||(32232993-32233048)
chr3 (229-287)||(53594976-53595034)
chr3 (223-280)||(23755287-23755344)
chr3 (86-156)||(30034682-30034753)
chr3 (229-287)||(37319460-37319518)
chr3 (223-284)||(23699329-23699390)
chr3 (223-284)||(23717784-23717845)
chr3 (223-284)||(23736240-23736301)
chr3 (223-287)||(26662538-26662602)
chr3 (235-287)||(33414013-33414065)
chr3 (174-221)||(11151599-11151646)
chr3 (168-222)||(42278455-42278509)
chr3 (235-287)||(3475407-3475459)
chr3 (235-287)||(9106281-9106333)
chr3 (86-157)||(15438537-15438609)
chr3 (88-227)||(15439596-15439738)
chr3 (235-287)||(19284685-19284737)
chr3 (235-287)||(46237758-46237810)
chr3 (235-287)||(47335046-47335098)
chr3 (248-287)||(19385315-19385354)
chr3 (229-284)||(39195111-39195166)
chr3 (235-282)||(41192355-41192402)
chr3 (248-287)||(50754032-50754071)
chr3 (248-287)||(51362438-51362477)
chr3 (235-282)||(51846785-51846832)
chr3 (248-287)||(52987650-52987689)
chr3 (245-287)||(9595980-9596022)
chr3 (168-222)||(36438773-36438827)
chr3 (235-284)||(30947914-30947963)
chr3 (229-278)||(41568839-41568888)
chr3 (235-284)||(54379177-54379226)
chr3 (235-287)||(2941926-2941978)
chr3 (223-287)||(10986354-10986418)
chr3 (86-156)||(30040457-30040526)
chr3 (86-157)||(37085479-37085551)
chr3 (86-157)||(37086656-37086728)
chr3 (168-222)||(11150271-11150325)
chr3 (168-222)||(34799865-34799919)
chr3 (245-287)||(39099220-39099262)
chr3 (250-287)||(7045300-7045337)
chr3 (251-284)||(16277417-16277450)
chr3 (235-287)||(6097684-6097736)
[»] chr8 (39 HSPs)
chr8 (86-222)||(3923524-3923662)
chr8 (86-157)||(3917862-3917933)
chr8 (86-157)||(3926121-3926192)
chr8 (229-284)||(40247288-40247343)
chr8 (223-278)||(2522869-2522924)
chr8 (223-287)||(12355424-12355488)
chr8 (229-287)||(13526671-13526729)
chr8 (229-287)||(13616206-13616264)
chr8 (223-287)||(15181792-15181856)
chr8 (235-287)||(30413928-30413980)
chr8 (235-282)||(9852284-9852331)
chr8 (230-281)||(30651958-30652009)
chr8 (235-282)||(34648133-34648180)
chr8 (229-275)||(10443582-10443628)
chr8 (247-287)||(8550529-8550569)
chr8 (235-287)||(10237368-10237420)
chr8 (235-287)||(19784285-19784337)
chr8 (235-287)||(41099196-41099248)
chr8 (235-287)||(43690654-43690706)
chr8 (248-287)||(7614094-7614133)
chr8 (229-287)||(28698580-28698639)
chr8 (248-287)||(32987445-32987484)
chr8 (246-284)||(15260854-15260892)
chr8 (245-287)||(34633321-34633363)
chr8 (250-287)||(4836701-4836738)
chr8 (250-287)||(4842146-4842183)
chr8 (51-92)||(5874613-5874654)
chr8 (235-287)||(15227044-15227096)
chr8 (235-287)||(41451119-41451171)
chr8 (235-282)||(23396491-23396538)
chr8 (248-287)||(39022001-39022040)
chr8 (248-287)||(42433727-42433766)
chr8 (244-282)||(35302591-35302629)
chr8 (235-284)||(1150026-1150075)
chr8 (223-287)||(1671801-1671868)
chr8 (250-283)||(7058142-7058175)
chr8 (229-278)||(44509061-44509110)
chr8 (42-74)||(29842109-29842141)
chr8 (174-222)||(40462270-40462318)
[»] chr5 (25 HSPs)
chr5 (223-287)||(16668794-16668858)
chr5 (223-283)||(33868157-33868217)
chr5 (86-157)||(29876013-29876084)
chr5 (229-286)||(4674968-4675025)
chr5 (223-284)||(16552642-16552703)
chr5 (223-287)||(18465556-18465620)
chr5 (223-278)||(39056461-39056516)
chr5 (229-278)||(7183145-7183194)
chr5 (235-287)||(13552997-13553049)
chr5 (235-287)||(14940356-14940408)
chr5 (235-287)||(15416678-15416730)
chr5 (235-287)||(30783449-30783501)
chr5 (86-157)||(32953159-32953235)
chr5 (248-287)||(13362796-13362835)
chr5 (248-287)||(25017217-25017256)
chr5 (86-153)||(32958033-32958100)
chr5 (235-284)||(3884038-3884087)
chr5 (229-278)||(15913140-15913189)
chr5 (235-287)||(14394482-14394534)
chr5 (235-287)||(26637837-26637889)
chr5 (251-287)||(34329156-34329192)
chr5 (248-287)||(28070153-28070192)
chr5 (244-287)||(37456703-37456746)
chr5 (248-287)||(42512225-42512264)
chr5 (51-92)||(5699875-5699916)
[»] scaffold0460 (1 HSPs)
scaffold0460 (223-278)||(1606-1661)
[»] scaffold0069 (1 HSPs)
scaffold0069 (223-278)||(51361-51416)
[»] scaffold0006 (2 HSPs)
scaffold0006 (223-278)||(171507-171562)
scaffold0006 (223-278)||(209328-209383)
[»] scaffold0049 (3 HSPs)
scaffold0049 (86-157)||(3332-3404)
scaffold0049 (86-157)||(1200-1273)
scaffold0049 (174-222)||(386-434)
[»] scaffold0717 (1 HSPs)
scaffold0717 (229-278)||(7351-7400)
[»] scaffold0571 (1 HSPs)
scaffold0571 (235-287)||(676-728)
[»] scaffold0071 (2 HSPs)
scaffold0071 (88-227)||(22453-22595)
scaffold0071 (86-157)||(23582-23654)
[»] scaffold0045 (1 HSPs)
scaffold0045 (235-287)||(33698-33750)
[»] scaffold0002 (1 HSPs)
scaffold0002 (223-275)||(450204-450256)
[»] scaffold0238 (1 HSPs)
scaffold0238 (248-287)||(25232-25271)
[»] scaffold0012 (1 HSPs)
scaffold0012 (223-278)||(119204-119259)
[»] scaffold0652 (1 HSPs)
scaffold0652 (86-131)||(6767-6812)
[»] scaffold0581 (1 HSPs)
scaffold0581 (235-287)||(8421-8473)
[»] scaffold0544 (1 HSPs)
scaffold0544 (248-287)||(10675-10714)
[»] scaffold0136 (1 HSPs)
scaffold0136 (49-92)||(35718-35761)
[»] scaffold0097 (1 HSPs)
scaffold0097 (248-287)||(13639-13678)
[»] scaffold0007 (1 HSPs)
scaffold0007 (51-92)||(14951-14992)
[»] scaffold0337 (1 HSPs)
scaffold0337 (251-287)||(7046-7082)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 54)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 35 - 400
Target Start/End: Original strand, 24686385 - 24686751
Alignment:
Q  35 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgcacagtcagatgctgactattgactgtggggggtaaaccaaggaatctgta 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24686385 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgcacagtcagatgctgactattggctgtggggggtaaaccaaggaatctgta 24686484  T
Q  135 tattacaagtgggaatctacaagnnnnnnnn-acaggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccccaaaaattatt 233  Q
    |||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24686485 tattacaagtgggaatctacaagtttttttttacaggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccccaaaagttatt 24686584  T
Q  234 atgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagataaagattggtgctgattgtcnnnnnnncagcagattctgcaattac 333  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||||| |    
T  24686585 atgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcggataaagattggtgctgattgtcaaaaaaacagcagattctgcaattgc 24686684  T
Q  334 aaacatcacttggaggtcttcatctcaataaacttatcattcttgcttatggatataatcacatgtc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24686685 aaacatcacttggaggtcttcatctcaataaacttatcattcttgcttatggatataatcacatgtc 24686751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 24127452 - 24127574
Alignment:
Q  35 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgcacagtcagatgctgactattgactgtggggggtaaaccaaggaatctgta 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| ||||| ||    
T  24127452 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgaacagtcagatgctgactattggctgtgggaggtaaaccaagaaatcttta 24127551  T
Q  135 tattacaagtgggaatctacaag 157  Q
    ||||||||||  |||||||||||    
T  24127552 tattacaagtaagaatctacaag 24127574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 25574192 - 25574128
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25574192 caaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagat 25574128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 16298929 - 16298987
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  16298929 ttattatgcataagtcatttccttatgcaccctgcataatcacttcacaaccatcagat 16298987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 17288687 - 17288619
Alignment:
Q  166 acaggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccccaaaaattatta 234  Q
    ||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||    
T  17288687 acaggggggtaaaccaaaagtcccccaaatggcaggggggtaaaagcctattaacccaaaaaattatta 17288619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 6866832 - 6866760
Alignment:
Q  86 cagtcagatgctgactattgactgt-ggggggtaaaccaaggaatctgtatattacaagtgggaatctacaag 157  Q
    |||||| |||||||||||||  ||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  6866832 cagtcatatgctgactattgggtgtaggggggtaaaccaaggaatcttcatattacaagtgggaatctacaag 6866760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 6872517 - 6872656
Alignment:
Q  86 cagtcagatgctgactattgactgt-ggggggtaaaccaaggaatctgtatattacaagtgggaatctacaagnnnnnnnna--caggggtgtaaaccaa 182  Q
    |||||| |||||||||||||  ||| |||||||||||||||||||||  ||||||||||||||||||||||||           | |||| |||||||||    
T  6872517 cagtcatatgctgactattgggtgtaggggggtaaaccaaggaatcttcatattacaagtgggaatctacaagttttttttttgcgggggggtaaaccaa 6872616  T
Q  183 aagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    |||| ||| |||||| |||||||||||  |||||||||||    
T  6872617 aagtaccccaaatggcaggggggtaaacccctattaaccc 6872656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 10472511 - 10472563
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||    
T  10472511 tgcataagtcatttccttatgcaccgtgcataaacatttcacaaccatcagat 10472563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 11785988 - 11786040
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||||||||||    
T  11785988 tgcataaaccatttccttatgcaccgtgcataaacacatcacaaccatcagat 11786040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 11798155 - 11798207
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||||||||||    
T  11798155 tgcataaaccatttccttatgcaccgtgcataaacacatcacaaccatcagat 11798207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 13635777 - 13635725
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  13635777 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 13635725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 49492564 - 49492512
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  49492564 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 49492512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 38010155 - 38010202
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccat 282  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  38010155 tgcataagtcatttccttatgcaccatgcataaacacttcacaaccat 38010202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 30357823 - 30357868
Alignment:
Q  237 cataaatcatttccttatgcaccctgcataaacacttcacaaccat 282  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  30357823 cataagtcatttccttatgcaccgtgcataaacacttcacaaccat 30357868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 1621889 - 1621941
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  1621889 tgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagat 1621941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 1729667 - 1729615
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||| |||| |||| |||||||||||||||||||||||||||    
T  1729667 tgcataagtcatttctttatacaccgtgcataaacacttcacaaccatcagat 1729615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 15051188 - 15051136
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  15051188 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 15051136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 30597713 - 30597765
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  30597713 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 30597765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 36011857 - 36011909
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  36011857 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 36011909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 46672453 - 46672505
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  46672453 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 46672505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 50563792 - 50563729
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| |||||||||||||   ||||| | |||||||||||||||||||||||||||||||||||    
T  50563792 caaaagttattatgcataagatatttcat-atgcaccctgcataaacacttcacaaccatcagat 50563729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 51921317 - 51921265
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  51921317 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 51921265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 55765495 - 55765547
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||||||||||||| ||||||||||| | |||||||||||||    
T  55765495 tgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcagat 55765547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 1997057 - 1997112
Alignment:
Q  167 caggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    |||||| ||| ||||||||  |||||||||| ||||||||||||||||||||||||    
T  1997057 caggggggtataccaaaagacccctaaatggcaggggggtaaaagcctattaaccc 1997112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 4168384 - 4168423
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  4168384 tccttatgcaccgtgcataaacacttcacaaccatcagat 4168423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 23506382 - 23506437
Alignment:
Q  167 caggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    |||||| ||||||||||||  ||| |||||| ||||||||||||||||||||||||    
T  23506382 caggggggtaaaccaaaagacccccaaatggcaggggggtaaaagcctattaaccc 23506437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 26447451 - 26447412
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  26447451 tccttatgcaccgtgcataaacacttcacaaccatcagat 26447412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 36621740 - 36621701
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  36621740 tccttatgcaccgtgcataaacacttcacaaccatcagat 36621701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 5169367 - 5169305
Alignment:
Q  168 aggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccccaaaaatt 230  Q
    ||||| ||||||||||||   || |||||| |||||||||||||||||||||||| |||||||    
T  5169367 aggggggtaaaccaaaagacgcccaaatggcaggggggtaaaagcctattaacccaaaaaatt 5169305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 16314201 - 16314255
Alignment:
Q  168 aggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||| ||||||||||||  ||| |||||| ||||||||||||||||||||||||    
T  16314201 aggggggtaaaccaaaagacccccaaatggcaggggggtaaaagcctattaaccc 16314255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 2848167 - 2848118
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||| ||||    
T  2848167 ttattatgcataagtcagttccttatgcaccctgcataaatactttacaa 2848118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 6212415 - 6212460
Alignment:
Q  86 cagtcagatgctgactattgactgtggggggtaaaccaaggaatct 131  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||    
T  6212415 cagtcagatgctgactattggatgtggggggtaaaccaaagaatct 6212460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 17288761 - 17288810
Alignment:
Q  173 tgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    |||| ||||||||| ||| |||||| ||||||||||||||||||||||||    
T  17288761 tgtacaccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 17288810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 49426109 - 49426060
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||||| | ||||||||||||||| ||||||||||| ||||||||||||    
T  49426109 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatca 49426060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 637883 - 637919
Alignment:
Q  251 ttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||| |||||||||||||||||||||||||||    
T  637883 ttatgcaccgtgcataaacacttcacaaccatcagat 637919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 2753075 - 2753119
Alignment:
Q  178 accaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||||    
T  2753075 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 2753119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 6386573 - 6386541
Alignment:
Q  255 gcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||||||||||||||||||||||||    
T  6386573 gcaccctgcataaacacttcacaaccatcagat 6386541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 20674728 - 20674792
Alignment:
Q  86 cagtcagatgctgactattgactgtggggggtaaaccaaggaatctgtatattacaagtgggaat 150  Q
    |||||||||||||||| ||| |||| ||||||||||||| |||||| || |||||| | ||||||    
T  20674728 cagtcagatgctgactgttggctgtagggggtaaaccaaagaatctttaaattacaggggggaat 20674792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 26578241 - 26578189
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  |||||| ||||||| | |||||||||||||||||||||||||||    
T  26578241 tgcataagccatttctttatgcatcgtgcataaacacttcacaaccatcagat 26578189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 27865789 - 27865737
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  ||||||| |||||||| ||||||||||| |||||||||||||||    
T  27865789 tgcataagccatttccatatgcaccgtgcataaacacatcacaaccatcagat 27865737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 35291600 - 35291548
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||| ||||    
T  35291600 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccataagat 35291548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 45256001 - 45256041
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagata 288  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  45256001 tccttatgcaccgtgcataaacacttcacaactatcagata 45256041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 22181284 - 22181245
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  22181284 tccttatgcaccgtgcataaaaacttcacaaccatcagat 22181245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 23504950 - 23504895
Alignment:
Q  167 caggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    |||||| |||||| |||||  ||| |||||| ||||||||||||||||||||||||    
T  23504950 caggggggtaaacaaaaagacccccaaatggcaggggggtaaaagcctattaaccc 23504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 27764266 - 27764305
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  27764266 tccttatgcaccgtgcataaacacttcgcaaccatcagat 27764305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 29826645 - 29826606
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  29826645 tccttatgcaccgtgcataagcacttcacaaccatcagat 29826606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 50643769 - 50643808
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  50643769 tccttatgcaccgtgcataaacacttcataaccatcagat 50643808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 6866746 - 6866693
Alignment:
Q  169 ggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    |||| ||||||||||||| ||| |||||| |||||||||||  |||||||||||    
T  6866746 ggggggtaaaccaaaagtaccccaaatggcaggggggtaaacccctattaaccc 6866693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 44353932 - 44353863
Alignment:
Q  166 acaggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccccaaaaattattat 235  Q
    ||||||| ||| ||||||||| ||| |||||| ||||||||||||| || |||||||  || ||||||||    
T  44353932 acaggggggtataccaaaagtcccccaaatggcaggggggtaaaagtctgttaacccttaatattattat 44353863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 53441334 - 53441383
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||||| | ||||||||||||| | ||||||||||| ||||||||||||    
T  53441334 tgcataagttatttccttatgcatcgtgcataaacacatcacaaccatca 53441383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 20673613 - 20673565
Alignment:
Q  174 gtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||||||||||   || |||||| ||||||||||||||||||||||||    
T  20673613 gtaaaccaaaagacacccaaatggcaggggggtaaaagcctattaaccc 20673565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 20674818 - 20674866
Alignment:
Q  174 gtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||||||||| |  || |||||| ||||||||||||||||||||||||    
T  20674818 gtaaaccaaaaatctcccaaatggcaggggggtaaaagcctattaaccc 20674866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 38244958 - 38245010
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  ||||||||| |||||  | |||||||||||||||||||||||||    
T  38244958 tgcataagccatttccttctgcacagttcataaacacttcacaaccatcagat 38245010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 38485710 - 38485674
Alignment:
Q  251 ttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  38485710 ttatgcaccgtgcataaacgcttcacaaccatcagat 38485674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 35 - 222
Target Start/End: Complemental strand, 9305811 - 9305621
Alignment:
Q  35 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgcacagtcagatgctgactattgactgtggggggtaaaccaaggaatctgta 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  9305811 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgcacagtcagatgctgactattggctgtggggggtaaaccaaggaatcttta 9305712  T
Q  135 tattacaagtgggaatctaca---agnnnnnnnnacaggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    |||||||||||||||||||||   |         ||||||  |||||||||||||  ||||||| | ||||||||||||||||||||||||    
T  9305711 tattacaagtgggaatctacaatgatttttttttacagggaggtaaaccaaaagtctcctaaatagcaggggggtaaaagcctattaaccc 9305621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 18611190 - 18611254
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| |||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||    
T  18611190 caaaagttattatgcataagacatttctttatgcactctgcataaacacttcacaaccatcagat 18611254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 31216676 - 31216728
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  31216676 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 31216728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 16968081 - 16968026
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    |||||||||||||  ||||| |||||||||||||||||||||||||| ||||||||    
T  16968081 ttattatgcataagccattttcttatgcaccctgcataaacacttcataaccatca 16968026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 30908666 - 30908713
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccat 282  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  30908666 tgcataagtcatttccttatgcaccgtgcataaacacttcacaaccat 30908713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 27079988 - 27079939
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||||||||    
T  27079988 ttattatgcataagtcattttcttatgcaccgtgcataaacacttcacaa 27079939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 1449556 - 1449608
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  1449556 tgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagat 1449608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 1536948 - 1536896
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  1536948 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 1536896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 6900817 - 6900869
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  6900817 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 6900869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 32556346 - 32556398
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttca 275  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  32556346 caaaagttattatgcataagtcattttcttatgcaccctgcataaacaattca 32556398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 4338675 - 4338620
Alignment:
Q  232 ttatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||  ||||| |||||||||||||||||||||||||| || ||||||||    
T  4338675 ttatgcataagccattttcttatgcaccctgcataaacacttcaaaatcatcagat 4338620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 21383819 - 21383874
Alignment:
Q  167 caggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    |||||| ||| ||||||||  |||||||||| ||||||||||||||||||||||||    
T  21383819 caggggggtataccaaaagacccctaaatggcaggggggtaaaagcctattaaccc 21383874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 35119261 - 35119300
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  35119261 tccttatgcaccgtgcataaacacttcacaaccatcagat 35119300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 25482202 - 25482148
Alignment:
Q  168 aggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||| ||||||||||||   ||||||||| ||||||||||||||||||||||||    
T  25482202 aggggggtaaaccaaaagactcctaaatggcaggggggtaaaagcctattaaccc 25482148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 29454610 - 29454651
Alignment:
Q  51 ttatacagtcagcatgccacatcaaccaaaatgcacagtcag 92  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  29454610 ttatacagtcagcgtgccacatcaacgaaaatgcacagtcag 29454651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 7089096 - 7089148
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||| ||||||||    
T  7089096 tgcataagttatttccttatgcaccgtgcataaacacatcacaatcatcagat 7089148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 33346410 - 33346374
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatca 284  Q
    |||||||||||| ||||||||||||||||||||||||    
T  33346410 tccttatgcaccgtgcataaacacttcacaaccatca 33346374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 34870138 - 34870086
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  |||||||||||||||| || |||||||| |||||||||||||||    
T  34870138 tgcataagccatttccttatgcaccatgtataaacacatcacaaccatcagat 34870086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 287
Target Start/End: Complemental strand, 24737726 - 24737691
Alignment:
Q  252 tatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||| |||||||||||||||||||||||||||    
T  24737726 tatgcaccgtgcataaacacttcacaaccatcagat 24737691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 29157252 - 29157291
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  29157252 tccttatgcaccgtgcataaacactttacaaccatcagat 29157291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 3120230 - 3120271
Alignment:
Q  49 atttatacagtcagcatgccacatcaaccaaaatgcacagtc 90  Q
    ||||||||||||||| |||||||||| | |||||||||||||    
T  3120230 atttatacagtcagcgtgccacatcagcgaaaatgcacagtc 3120271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 32146093 - 32146146
Alignment:
Q  169 ggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    |||| ||||||||||||  ||| |||||| |||||| |||||||||||||||||    
T  32146093 ggggggtaaaccaaaagacccccaaatggcagggggataaaagcctattaaccc 32146146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 12394419 - 12394387
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaacc 280  Q
    |||||||||||| ||||||||||||||||||||    
T  12394419 tccttatgcaccgtgcataaacacttcacaacc 12394387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 32146003 - 32146059
Alignment:
Q  86 cagtcagatgctgactattgactgtggggg-gtaaaccaaggaatctgtatattaca 141  Q
    |||||||||||||||| ||| ||||||||| ||||||||| |||||| ||| |||||    
T  32146003 cagtcagatgctgactgttggctgtgggggtgtaaaccaatgaatctttattttaca 32146059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 25648814 - 25648692
Alignment:
Q  35 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgcacagtcagatgctgactattgactgt-ggggggtaaaccaaggaatctgt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |    
T  25648814 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgaacagtcagatgctgactattggctgtgggggggtaaaccaaggaatcttt 25648715  T
Q  134 atattacaagtgggaatctacaa 156  Q
    |||||||||||| ||||||||||    
T  25648714 atattacaagtgagaatctacaa 25648692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 5098717 - 5098779
Alignment:
Q  222 ccaaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5098717 ccaaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatca 5098779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 39548050 - 39548105
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39548050 ttattatacataagtcatttccttatgcaccctgcataaacacttcacaaccatca 39548105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 25995288 - 25995352
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| |||||||||||||  ||||||||||||||| ||||||||| ||||||||||||||||||    
T  25995288 caaaagttattatgcataagacatttccttatgcactctgcataaatacttcacaaccatcagat 25995352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 36637001 - 36636937
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| ||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||    
T  36637001 caaaagttattatgcataagtcattttcttatgtaccctacataaacacttcacaaccatcagat 36636937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 18751395 - 18751466
Alignment:
Q  87 agtcagatgctgactattgactgtg-gggggtaaaccaaggaatctgtatattacaagtgggaatctacaag 157  Q
    ||||| ||| ||| |||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  18751395 agtcatatgatgaatattgattgtgagggggtaaaccaaggaatctttatattacaagtgggaatctacaag 18751466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 13081918 - 13081864
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatc 283  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||    
T  13081918 ttattatgcataagtcatttcattatgcaccctacataaacacttcacaaccatc 13081864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 4281852 - 4281788
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| |||||||||||||  |||||||||||| || ||| ||||||||||||||||||||||||    
T  4281852 caaaagttattatgcataagacatttccttatgtactctgtataaacacttcacaaccatcagat 4281788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 40853737 - 40853685
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaacca 281  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  40853737 ttattatgcataagccatttccttatgcatcctgcataaacacttcacaacca 40853685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 16142133 - 16142075
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||| ||  ||||||||||||||| ||||||||||||||||||||||| ||||    
T  16142133 ttattatgcacaagccatttccttatgcacgctgcataaacacttcacaaccattagat 16142075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 38000467 - 38000521
Alignment:
Q  86 cagtcagatgctgactattgactgtggggggtaaaccaaggaatctgtatattac 140  Q
    |||||||||||||||||||| |||||||||||||||||| |||||| ||| ||||    
T  38000467 cagtcagatgctgactattggctgtggggggtaaaccaaagaatctttattttac 38000521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 24024682 - 24024633
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  24024682 ttattatgcataagtcaattccttatgcaccatgcataaacacttcacaa 24024633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 15016618 - 15016566
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  15016618 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 15016566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 39355049 - 39355101
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  39355049 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 39355101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 18298150 - 18298111
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  18298150 tccttatgcaccgtgcataaacacttcacaaccatcagat 18298111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 7487296 - 7487254
Alignment:
Q  245 atttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  7487296 atttccttatgcaccgtgcataaacacatcacaaccatcagat 7487254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 2263587 - 2263635
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatc 283  Q
    |||||||  |||||| ||||||||| |||||||||||||||||||||||    
T  2263587 tgcataagccatttctttatgcaccgtgcataaacacttcacaaccatc 2263635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 8149845 - 8149897
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  |||||||||||||| | ||||||||||| |||||||||||||||    
T  8149845 tgcataagccatttccttatgcatcgtgcataaacacatcacaaccatcagat 8149897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 8154469 - 8154521
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  |||||||||||||| | ||||||||||| |||||||||||||||    
T  8154469 tgcataagccatttccttatgcatcgtgcataaacacatcacaaccatcagat 8154521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 9143599 - 9143651
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||| ||||||||    
T  9143599 tgcataagttatttccttatgcaccgtgcataaacacatcacaatcatcagat 9143651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 30776510 - 30776466
Alignment:
Q  178 accaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||||||| | | |||||||||||||||||||||||||||||||    
T  30776510 accaaaagtcctccaaatggtaggggggtaaaagcctattaaccc 30776466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 34464725 - 34464777
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||  |||||||||||||||    
T  34464725 tgcataagttatttccttatgcaccgtgcataaacatatcacaaccatcagat 34464777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 4579857 - 4579818
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  4579857 tccttatgcaccatgcataaacactttacaaccatcagat 4579818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 18762881 - 18762928
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccat 282  Q
    ||||||| | ||||||||||||||| ||||||||||| ||||||||||    
T  18762881 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccat 18762928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 20709800 - 20709839
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  20709800 tccttatccaccgtgcataaacacttcacaaccatcagat 20709839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 25192918 - 25192957
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  25192918 tccttatgcaccgtgcataaacacttcacaaccattagat 25192957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 4025033 - 4024992
Alignment:
Q  51 ttatacagtcagcatgccacatcaaccaaaatgcacagtcag 92  Q
    ||||||||||||| |||||||||| | |||||||||||||||    
T  4025033 ttatacagtcagcgtgccacatcagcgaaaatgcacagtcag 4024992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 1292231 - 1292179
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | |||| |||||||||| | ||||||||| |||||||||||||||    
T  1292231 tgcataagttattttcttatgcaccgtacataaacacatcacaaccatcagat 1292179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 12058 - 12180
Alignment:
Q  35 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgcacagtcagatgctgactattgactgtggggggtaaaccaaggaatctgta 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| ||||| ||    
T  12058 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgaacagtcagatgctgactattggctgtgggaggtaaaccaagaaatcttta 12157  T
Q  135 tattacaagtgggaatctacaag 157  Q
    ||||||||||  |||||||||||    
T  12158 tattacaagtaagaatctacaag 12180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 49383213 - 49383092
Alignment:
Q  35 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgcacagtcagatgctgactattgactgtggggggtaaaccaaggaatctgta 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| |||||||||| ||||| ||    
T  49383213 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgcactgtcagatgctgactattggctgt-gggcgtaaaccaagtaatcttta 49383115  T
Q  135 tattacaagtgggaatctacaag 157  Q
    |||||||||||||||||||||||    
T  49383114 tattacaagtgggaatctacaag 49383092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 315 - 400
Target Start/End: Complemental strand, 39539934 - 39539849
Alignment:
Q  315 cagcagattctgcaattacaaacatcacttggaggtcttcatctcaataaacttatcattcttgcttatggatataatcacatgtc 400  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  39539934 cagcagattctgcaattgcaaacatcacttgcaggtcttcatctcaataaacttatcactcttgcttttggatataatcacatgtc 39539849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 33097413 - 33097471
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33097413 ttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagat 33097471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 51801791 - 51801734
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcaga 286  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51801791 ttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcaga 51801734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 37639343 - 37639407
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  37639343 caaaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaaccatcagat 37639407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 44260526 - 44260584
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44260526 ttattatgcgtaagtcatttccttatgcaccctgcataaacacttcacaaccatcagat 44260584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 11421608 - 11421660
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11421608 tgcataaatcatttccttatgcaccgtgcataaacacttcacaaccatcagat 11421660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 35198245 - 35198181
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||    
T  35198245 caaaagttattatgcataagacatttccttatgcaccctgcataaacacttcacagccatcagat 35198181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 13673893 - 13673948
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  13673893 caaaaattattatgcataagtcatttccttatgcaccctgtataaacacttcacaa 13673948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 20372207 - 20372262
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  20372207 caaaaattattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 20372262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 31529723 - 31529665
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  31529723 ttattatgcataagccatttccttatgcaccatgcataaacacttcacaaccatcagat 31529665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 44688668 - 44688610
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  44688668 ttatcatgcataagtcatttccttatgcacgctgcataaacacttcacaaccatcagat 44688610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 13590469 - 13590524
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  13590469 caaaagttattatgcataagtcatttccttatgcaccctgcataaacactttacaa 13590524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 18618849 - 18618901
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||    
T  18618849 tgcataaattatttccttatgcaccgtgcataaacacatcacaaccatcagat 18618901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 28323396 - 28323332
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| ||||||||||||| ||||||  ||||||||||| |||||||||| ||||||||||||||    
T  28323396 caaaagttattatgcataagtcatttttttatgcaccctccataaacactacacaaccatcagat 28323332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 34369662 - 34369726
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||  |||||||  ||||| |||||||||| |||||||||||||||||||||||||||    
T  34369662 caaaaattatggtgcataagccattttcttatgcaccgtgcataaacacttcacaaccatcagat 34369726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 49936989 - 49936937
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  49936989 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 49936937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 50351817 - 50351869
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  50351817 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 50351869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 5077511 - 5077457
Alignment:
Q  224 aaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    |||| ||||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  5077511 aaaagttattatgcataagtcatttccttatgcgccctgcataagcacttcacaa 5077457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 21747997 - 21747933
Alignment:
Q  168 aggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccccaaaaattat 232  Q
    ||||| ||||||||||||  ||| |||||| |||||||||||||||||||||||| || ||||||    
T  21747997 aggggggtaaaccaaaagacccccaaatggcaggggggtaaaagcctattaaccctaataattat 21747933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 24635940 - 24635992
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  24635940 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 24635992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 51420347 - 51420410
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| ||||||||||||| ||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  51420347 caaaagttattatgcataagtcaattctttatgcatcctgcataaaca-ttcacaaccatcagat 51420410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 284
Target Start/End: Complemental strand, 4097950 - 4097911
Alignment:
Q  245 atttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  4097950 atttccttatgcaccgtgcataaacacttcacaaccatca 4097911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 18056810 - 18056849
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  18056810 tccttatgcaccgtgcataaacacttcacaaccatcagat 18056849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 25889070 - 25889028
Alignment:
Q  245 atttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  25889070 atttccttatgcaccgtgcataaacacatcacaaccatcagat 25889028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 23175574 - 23175525
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    |||||||  ||||||||||||| || ||||||||||||||||||||||||    
T  23175574 tgcataagccatttccttatgcgccgtgcataaacacttcacaaccatca 23175525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 13970886 - 13970930
Alignment:
Q  51 ttatacagtcagcatgccacatcaaccaaaatgcacagtcagatg 95  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||    
T  13970886 ttatacagtcagcacgccacatcaaccaaattacacagtcagatg 13970930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 16115877 - 16115913
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatca 284  Q
    |||||||||||| ||||||||||||||||||||||||    
T  16115877 tccttatgcaccgtgcataaacacttcacaaccatca 16115913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 17240773 - 17240717
Alignment:
Q  166 acaggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||||| ||| ||||||||  ||| |||||| ||||||||||||||||||||||||    
T  17240773 acaggggggtataccaaaagacccccaaatggcaggggggtaaaagcctattaaccc 17240717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 19897812 - 19897760
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||  |||||||||||||||    
T  19897812 tgcataagttatttccttatgcaccgtgcataaacatatcacaaccatcagat 19897760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 20434774 - 20434722
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||||| ||||    
T  20434774 tgcataagccatttccttatgcaccgtgcataaacacatcacaaccattagat 20434722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 28375478 - 28375530
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||| ||||||||| ||||||||||| |||||||||||||||    
T  28375478 tgcataagttatttctttatgcaccgtgcataaacacatcacaaccatcagat 28375530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 43452556 - 43452608
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| ||||||| |||||||    
T  43452556 tgcataagttatttccttatgcaccgtgcataaacacatcacaactatcagat 43452608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 48762383 - 48762331
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||| ||||    
T  48762383 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccattagat 48762331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 21256824 - 21256777
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccat 282  Q
    |||||||  ||||| |||||||||| ||||||||||||||||||||||    
T  21256824 tgcataagccattttcttatgcaccgtgcataaacacttcacaaccat 21256777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 42098737 - 42098784
Alignment:
Q  175 taaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    |||||||||||  ||| |||||| ||||||||||||||||||||||||    
T  42098737 taaaccaaaagacccccaaatggcaggggggtaaaagcctattaaccc 42098784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 44753462 - 44753419
Alignment:
Q  49 atttatacagtcagcatgccacatcaaccaaaatgcacagtcag 92  Q
    ||||||||||||||| |||||||||| | |||||||||||||||    
T  44753462 atttatacagtcagcgtgccacatcagcgaaaatgcacagtcag 44753419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 2741044 - 2741102
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||||| ||||||| ||||| || ||||||||||| ||||||| ||| ||||    
T  2741044 ttattatgcataagtcatttctttatgtactctgcataaacatttcacaatcattagat 2741102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 16975978 - 16976020
Alignment:
Q  245 atttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||||||| || |||||||| |||||||||||||||    
T  16975978 atttccttatgcaccgtgtataaacacatcacaaccatcagat 16976020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 17242101 - 17242163
Alignment:
Q  166 acaggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccccaaaaa 228  Q
    ||||||| ||| |||||||   ||| |||||| |||||||||||||||||||||||| |||||    
T  17242101 acaggggggtataccaaaaagcccccaaatggcaggggggtaaaagcctattaaccctaaaaa 17242163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 30788350 - 30788409
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||| ||||||||||||| |||||||||||||||  ||||||  ||| |||||||||||||    
T  30788350 caaaagttattatgcataagtcatttccttatgcagtctgcat--acatttcacaaccatca 30788409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 42097380 - 42097326
Alignment:
Q  168 aggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||| ||||||||||||  ||| |||||| |||||||||||| |||||||||||    
T  42097380 aggggggtaaaccaaaagacccccaaatggcaggggggtaaaaacctattaaccc 42097326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 43403297 - 43403363
Alignment:
Q  168 aggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccccaaaaattatta 234  Q
    ||||| ||||||||||||  ||| |||||  |||||| |||||||||||||||||  ||||||||||    
T  43403297 aggggggtaaaccaaaagacccccaaatgacagggggataaaagcctattaacccttaaaattatta 43403363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 49383069 - 49383012
Alignment:
Q  174 gtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccccaaaaattat 232  Q
    ||||||||||||| |||||||||| | ||||||||||| |||||||||  |||||||||    
T  49383069 gtaaaccaaaagtcccctaaatggca-gggggtaaaagtctattaaccgaaaaaattat 49383012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 6314129 - 6314178
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    |||||||  |||||||||||||||| ||||||||||| ||||| ||||||    
T  6314129 tgcataagccatttccttatgcaccgtgcataaacacatcacagccatca 6314178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 22348065 - 22348101
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||||||||||  |||||||||||||||||||||||    
T  22348065 tccttatgcaccgcgcataaacacttcacaaccatca 22348101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 43403214 - 43403278
Alignment:
Q  89 tcagatgctgactattgactgtggggg-gtaaaccaaggaatctgtatattacaagtgggaatct 152  Q
    ||||||||||||| ||||||||||||| ||||||||| ||| || ||| ||||| | ||||||||    
T  43403214 tcagatgctgactgttgactgtgggggtgtaaaccaaagaacctttattttacaggagggaatct 43403278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 315 - 400
Target Start/End: Complemental strand, 46346630 - 46346545
Alignment:
Q  315 cagcagattctgcaattacaaacatcacttggaggtcttcatctcaataaacttatcattcttgcttatggatataatcacatgtc 400  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  46346630 cagcagattctgcaattgtaaacatcacttgcaggtcttcatctcaataaacttatcattcttgcttttggatacaatcacatgtc 46346545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 39007707 - 39007652
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39007707 ttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatca 39007652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 34875497 - 34875555
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  34875497 ttattatgcataagccatttccttatgcaccctgcataaacacttcacaaccatcagat 34875555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 5757388 - 5757452
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| |||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  5757388 caaaagttattatgcataagacatttccttatgcaccgtgcataaacacttcacaaccatcagat 5757452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 44141315 - 44141255
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatc 283  Q
    ||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44141315 caaaagttatcatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatc 44141255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 6797449 - 6797394
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  6797449 caaaagttattatgcataagtcatttccttatgcatcctgcataaacacttcacaa 6797394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 46346780 - 46346719
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||| ||||||||||||| |||||| |||||||| |||| |||||||||||||||||||||    
T  46346780 caaaagttattatgcataagtcattttcttatgcatcctgtataaacacttcacaaccatca 46346719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 15815557 - 15815613
Alignment:
Q  35 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgcacagtca 91  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||    
T  15815557 tcaaaactaaaattatttatacagtcagcacgccgcatcagccaaaatacacagtca 15815613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 16933296 - 16933244
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  16933296 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 16933244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 16938679 - 16938627
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  16938679 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 16938627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 763711 - 763763
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  763711 tgcataagccatttccttatgcaccgtgcataaacacgtcacaaccatcagat 763763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 20000726 - 20000674
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| |||||| |||||||||| ||||||||||| |||||||||||||||    
T  20000726 tgcataagtcatttacttatgcaccgtgcataaacacatcacaaccatcagat 20000674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 27335692 - 27335629
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| |||||||  |||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  27335692 caaaagttattataaataagtcattttcttatgcacc-tgcataaacacttcacaaccatcagat 27335629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 30884274 - 30884222
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  30884274 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 30884222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 31660083 - 31660135
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  31660083 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 31660135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 41911161 - 41911109
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  41911161 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 41911109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 46024053 - 46024093
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagata 288  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  46024053 tccttatgcaccgtgcataaacacttcacaaccatcagata 46024093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 46358534 - 46358586
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  46358534 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 46358586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 21262035 - 21261980
Alignment:
Q  167 caggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    |||||| ||| ||||||||  |||||||||| ||||||||||||||||||||||||    
T  21262035 caggggggtataccaaaagacccctaaatggcaggggggtaaaagcctattaaccc 21261980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 24359885 - 24359932
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccat 282  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  24359885 tgcataagtcatttccttatgcaccgtgcatcaacacttcacaaccat 24359932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 45402934 - 45402879
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||| ||||||||||||| | |||||||||||||||| |||||||||||| ||||    
T  45402934 caaaagttattatgcataagttatttccttatgcacccagcataaacactttacaa 45402879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 12629429 - 12629483
Alignment:
Q  168 aggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||| ||||||||||||  || ||||||| ||||||||||||||||||||||||    
T  12629429 aggggggtaaaccaaaagacccgtaaatggcaggggggtaaaagcctattaaccc 12629483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 5769304 - 5769360
Alignment:
Q  166 acaggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||||| ||| ||||||||  ||| |||||| ||||||||||||||||||||||||    
T  5769304 acaggggggtataccaaaagacccccaaatggcaggggggtaaaagcctattaaccc 5769360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 12628087 - 12628027
Alignment:
Q  168 aggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccccaaaaa 228  Q
    ||||| ||||||||||||  ||  |||||| |||||||||||||||||||||||| |||||    
T  12628087 aggggggtaaaccaaaagacccgcaaatggcaggggggtaaaagcctattaaccctaaaaa 12628027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 15974975 - 15974939
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatca 284  Q
    |||||||||||| ||||||||||||||||||||||||    
T  15974975 tccttatgcaccgtgcataaacacttcacaaccatca 15974939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 23455537 - 23455477
Alignment:
Q  35 tcaaaactaaaattatttatacagtcagcatgccacatcaaccaaaatgcacagtcagatg 95  Q
    |||||||||||||||||||||||||  ||  ||||||||| |||| || ||||||||||||    
T  23455537 tcaaaactaaaattatttatacagttggcgcgccacatcagccaacatacacagtcagatg 23455477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 35736963 - 35737011
Alignment:
Q  236 gcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    |||||| | ||||||||||||||| ||||||||||| ||||||||||||    
T  35736963 gcataagttatttccttatgcaccgtgcataaacacatcacaaccatca 35737011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 47578585 - 47578645
Alignment:
Q  168 aggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccccaaaaa 228  Q
    ||||| ||| |||||||||  || |||||| |||||||||||||||||||||||| |||||    
T  47578585 aggggggtataccaaaagtctcccaaatggcaggggggtaaaagcctattaacccaaaaaa 47578645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 924427 - 924462
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcac 258  Q
    ||||||||||||||||||| ||||||||||||||||    
T  924427 caaaaattattatgcataagtcatttccttatgcac 924462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 30428899 - 30428938
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  30428899 tccttatgcaccgtgcataaacatttcacaaccatcagat 30428938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 5737233 - 5737176
Alignment:
Q  166 acaggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaacccc 223  Q
    ||||||| ||| |||||||   ||| |||||| |||||||||||||||||||||||||    
T  5737233 acaggggggtataccaaaaagcccccaaatggcaggggggtaaaagcctattaacccc 5737176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 23806390 - 23806349
Alignment:
Q  51 ttatacagtcagcatgccacatcaaccaaaatgcacagtcag 92  Q
    ||||||||||||| |||||||||| | |||||||||||||||    
T  23806390 ttatacagtcagcgtgccacatcagcgaaaatgcacagtcag 23806349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 11732699 - 11732647
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  ||||| |||||||||  |||||||||||||||||||||| ||||    
T  11732699 tgcataagccattttcttatgcactgtgcataaacacttcacaaccattagat 11732647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 23525637 - 23525581
Alignment:
Q  166 acaggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||||| ||| ||||||| | ||| |||||| || |||||||||||||||||||||    
T  23525637 acaggggggtataccaaaaatcccccaaatggcagcggggtaaaagcctattaaccc 23525581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 48690921 - 48690957
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatca 284  Q
    |||||||||||| |||||||||| |||||||||||||    
T  48690921 tccttatgcaccgtgcataaacagttcacaaccatca 48690957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 28299865 - 28299781
Alignment:
Q  316 agcagattctgcaattacaaacatcacttggaggtcttcatctcaataaacttatcattcttgcttatggatataatcacatgtc 400  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  28299865 agcaaattctgcaattgcaaacatcgcttggaggtcttcatctcaataaacttatcattcttgcttttgcatataatcacatgtc 28299781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 47728390 - 47728454
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  47728390 caaaagttattatgcataagtcattttcttatgcaccctgcataaacacttcacaaccatcagat 47728454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 51682066 - 51682002
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  51682066 caaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcgcaaccatcagat 51682002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 28300016 - 28299952
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||    
T  28300016 caaaaattattatgcataagtcatttccttatgtaccatgcataaacacttcacaactatcagat 28299952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 32232993 - 32233048
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32232993 caaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 32233048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 53594976 - 53595034
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||    
T  53594976 ttattatgcataagccattttcttatgcaccctgcataaacacttcacaaccatcagat 53595034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 23755287 - 23755344
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaacc 280  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  23755287 caaaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaacc 23755344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 30034753 - 30034682
Alignment:
Q  86 cagtcagatgctgactattgactgtgggggg-taaaccaaggaatctgtatattacaagtgggaatctacaa 156  Q
    |||||||| ||||||||||| || ||||||| |||||||||||||||  |||||||||||||||||||||||    
T  30034753 cagtcagacgctgactattggctttgggggggtaaaccaaggaatcttcatattacaagtgggaatctacaa 30034682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 37319518 - 37319460
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||  ||||||||    
T  37319518 ttattatgcataagtcattttcttatgcaccctgcataaacacttcacattcatcagat 37319460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 23699329 - 23699390
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||| |||||||||||||  ||||| ||||| |||||||||||||||||||||||||||||    
T  23699329 caaaagttattatgcataagacattttcttatacaccctgcataaacacttcacaaccatca 23699390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 23717784 - 23717845
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||| |||||||||||||  ||||| ||||| |||||||||||||||||||||||||||||    
T  23717784 caaaagttattatgcataagacattttcttatacaccctgcataaacacttcacaaccatca 23717845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 23736240 - 23736301
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||| |||||||||||||  ||||| ||||| |||||||||||||||||||||||||||||    
T  23736240 caaaagttattatgcataagacattttcttatacaccctgcataaacacttcacaaccatca 23736301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 26662602 - 26662538
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| ||||| |||||||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  26662602 caaaagttattgtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagat 26662538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 33414065 - 33414013
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  33414065 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 33414013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 11151599 - 11151646
Alignment:
Q  174 gtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaacc 221  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  11151599 gtaaaccaaaagtcccccaaatggtaggggggtaaaagcctattaacc 11151646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 42278455 - 42278509
Alignment:
Q  168 aggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||| ||||||||||||  ||| |||||||||||||||||||||||||||||||    
T  42278455 aggggggtaaaccaaaagacccccaaatggtaggggggtaaaagcctattaaccc 42278509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 3475459 - 3475407
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  3475459 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 3475407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 9106281 - 9106333
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||||||||||||| ||||||||||| | |||||||||||||    
T  9106281 tgcataagtcatttccttatgcaccgtgcataaacacattacaaccatcagat 9106333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 15438609 - 15438537
Alignment:
Q  86 cagtcagatgctgactattgactgtgg-ggggtaaaccaaggaatctgtatattacaagtgggaatctacaag 157  Q
    ||||||||||||||||||||||||||| ||||||| |||| |||||| ||| ||||| | |||||||| ||||    
T  15438609 cagtcagatgctgactattgactgtgggggggtaatccaaagaatctctattttacaggggggaatctccaag 15438537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 15439596 - 15439738
Alignment:
Q  88 gtcagatgctgactattgactgtggggggtaaaccaaggaatctgtatattacaagtgggaatctacaag---nnnnnnnnacaggggtgtaaaccaaaa 184  Q
    |||||||||||||| ||| |||||||||||||||||| |||||| ||| ||||| | | |||||| ||||           | ||||| |||||||||||    
T  15439596 gtcagatgctgactgttggctgtggggggtaaaccaaagaatctctattttacaggggagaatctccaagttttttttttcataggggggtaaaccaaaa 15439695  T
Q  185 gttccctaaatggtaggggggtaaaagcctattaaccccaaaa 227  Q
    |  ||| ||||||  ||||||||||||||||||||||| ||||    
T  15439696 gacccccaaatggcgggggggtaaaagcctattaaccctaaaa 15439738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 19284685 - 19284737
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  19284685 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 19284737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 46237810 - 46237758
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  46237810 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 46237758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 47335046 - 47335098
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  47335046 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 47335098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 19385354 - 19385315
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  19385354 tccttatgcaccgtgcataaacacttcacaaccatcagat 19385315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 39195166 - 39195111
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||||| | ||||||||    
T  39195166 ttattatgcataagtcatttcctcatgcaccctgcatgaacactttataaccatca 39195111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 41192402 - 41192355
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccat 282  Q
    ||||||| ||||||||||||||||| | ||||||||||||||||||||    
T  41192402 tgcataagtcatttccttatgcaccgtacataaacacttcacaaccat 41192355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 50754032 - 50754071
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  50754032 tccttatgcaccgtgcataaacacttcacaaccatcagat 50754071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 51362477 - 51362438
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  51362477 tccttatgcaccgtgcataaacacttcacaaccatcagat 51362438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 51846832 - 51846785
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccat 282  Q
    |||||||  |||||||||||||||| ||||||||||||||||||||||    
T  51846832 tgcataagccatttccttatgcaccgtgcataaacacttcacaaccat 51846785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 52987689 - 52987650
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  52987689 tccttatgcaccgtgcataaacacttcacaaccatcagat 52987650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 9596022 - 9595980
Alignment:
Q  245 atttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  9596022 atttccttatgcaccgtgcataaacacatcacaaccatcagat 9595980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 36438773 - 36438827
Alignment:
Q  168 aggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||| ||||||||||||  ||| |||||| ||||||||||||||||||||||||    
T  36438773 aggggggtaaaccaaaagacccccaaatggcaggggggtaaaagcctattaaccc 36438827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 30947963 - 30947914
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||| |||||    
T  30947963 tgcataagtcatttccttatgcaccgtgcataaacacatcacaatcatca 30947914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 41568839 - 41568888
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||||||||||| ||| ||||||||||||| |||||||| |||||||||    
T  41568839 ttattatgcataagtcaattccttatgcaccatgcataaatacttcacaa 41568888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 54379177 - 54379226
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||||| | ||||||||||||||| ||||||||||| ||||||||||||    
T  54379177 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatca 54379226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 2941978 - 2941926
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||| ||| ||||||||||| |||||||||||||||    
T  2941978 tgcataagttatttccttatgtaccgtgcataaacacatcacaaccatcagat 2941926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 10986354 - 10986418
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| |||| ||| |||| | ||||||||||||||| ||||||||||| ||| |||||||||||    
T  10986354 caaaagttatgatgtataagttatttccttatgcaccgtgcataaacacatcataaccatcagat 10986418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 30040457 - 30040526
Alignment:
Q  86 cagtcagatgctgactattgactgtgggggg-taaaccaaggaatctgtatattacaagtgggaatctacaa 156  Q
    |||||||| ||||||||||| || ||||||| |||||||||||||    |||||||||||||||||||||||    
T  30040457 cagtcagacgctgactattggctttgggggggtaaaccaaggaattc--atattacaagtgggaatctacaa 30040526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 37085551 - 37085479
Alignment:
Q  86 cagtcagatgctgactattgactgt-ggggggtaaaccaaggaatctgtatattacaagtgggaatctacaag 157  Q
    |||||||||||||||| ||| |||| |||||||||||||| |||||| ||| ||||| | |||||||| ||||    
T  37085551 cagtcagatgctgactgttggctgtaggggggtaaaccaaagaatctttattttacaggggggaatctccaag 37085479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 37086656 - 37086728
Alignment:
Q  86 cagtcagatgctgactattgactgt-ggggggtaaaccaaggaatctgtatattacaagtgggaatctacaag 157  Q
    |||||||||||||||| ||| |||| |||||||||||||| |||||| ||| ||||| | |||||||| ||||    
T  37086656 cagtcagatgctgactgttggctgtaggggggtaaaccaaagaatctttattttacaggggggaatctccaag 37086728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 11150325 - 11150271
Alignment:
Q  168 aggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||| ||||||||||| | ||| ||||||  |||||||||||||||||||||||    
T  11150325 aggggggtaaaccaaaaatcccccaaatggctggggggtaaaagcctattaaccc 11150271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 34799919 - 34799865
Alignment:
Q  168 aggggtgtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||| ||||||||||||  ||| |||||| ||||||||||||| ||||||||||    
T  34799919 aggggggtaaaccaaaagacccccaaatggcaggggggtaaaagtctattaaccc 34799865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 39099220 - 39099262
Alignment:
Q  245 atttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||||||| |||||||| | ||||||||||||||||    
T  39099220 atttccttatgcaccgtgcataaatatttcacaaccatcagat 39099262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 7045337 - 7045300
Alignment:
Q  250 cttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||| || ||||||||||||||||||||||||    
T  7045337 cttatgcaccgtgtataaacacttcacaaccatcagat 7045300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 16277450 - 16277417
Alignment:
Q  251 ttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||||||| ||||||||||||||||||||||||    
T  16277450 ttatgcaccgtgcataaacacttcacaaccatca 16277417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 6097736 - 6097684
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| ||| ||| |||||||    
T  6097736 tgcataagttatttccttatgcaccgtgcataaacacatcataactatcagat 6097684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 3923524 - 3923662
Alignment:
Q  86 cagtcagatgctgactattgactgtggggggtaaaccaaggaatctgtatattacaagtgggaatctacaag--nnnnnnnnacaggggtgtaaaccaaa 183  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||  ||||||||||||||||||||||||           |||||| ||||||||||    
T  3923524 cagtcagacgctgactattggctttggggggtaaaccaaggaatcttcatattacaagtgggaatctacaagttttttttttgcaggggggtaaaccaaa 3923623  T
Q  184 agttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
     ||  || |||||||||||||||||||||||||||||||    
T  3923624 tgtcgcccaaatggtaggggggtaaaagcctattaaccc 3923662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 3917933 - 3917862
Alignment:
Q  86 cagtcagatgctgactattgactgtggggggtaaaccaaggaatctgtatattacaagtgggaatctacaag 157  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  3917933 cagtcagacgctgactattggctttggggggtaaaccaaggaatcttcatattacaagtgggaatctacaag 3917862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 3926192 - 3926121
Alignment:
Q  86 cagtcagatgctgactattgactgtggggggtaaaccaaggaatctgtatattacaagtgggaatctacaag 157  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  3926192 cagtcagacgctgactattggctttggggggtaaaccaaggaatcttcatattacaagtgggaatctacaag 3926121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 40247343 - 40247288
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40247343 ttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatca 40247288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 2522869 - 2522924
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2522869 caaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 2522924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 12355424 - 12355488
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| |||||| |||||| |||||| ||||||||||||||||||||||||||||||||| ||||    
T  12355424 caaaagttattacgcataagtcattttcttatgcaccctgcataaacacttcacaaccattagat 12355488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 13526729 - 13526671
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||||  |||||||||||| || ||||||||||||||||||||||||||||    
T  13526729 ttattatgcataagccatttccttatgtactctgcataaacacttcacaaccatcagat 13526671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 13616264 - 13616206
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||||  |||||||||||| || ||||||||||||||||||||||||||||    
T  13616264 ttattatgcataagccatttccttatgtactctgcataaacacttcacaaccatcagat 13616206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 15181792 - 15181856
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| |||||||||||||    ||||||||||||||||||||||||||||||||| ||||||||    
T  15181792 caaaagttattatgcataatatgtttccttatgcaccctgcataaacacttcacaagcatcagat 15181856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 30413928 - 30413980
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  30413928 tgcataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 30413980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 9852284 - 9852331
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccat 282  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  9852284 tgcataagtcatttccttatgcaccgtgcataaacacttcacaaccat 9852331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 30651958 - 30652009
Alignment:
Q  230 tattatgcataaatcatttccttatgcaccctgcataaacacttcacaacca 281  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  30651958 tattatgcataatctatttccttatgcaccctgcataaacacttcacaacca 30652009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 34648180 - 34648133
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccat 282  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  34648180 tgcataagtcatttccttatgcaccgtgcataaacacttcacaaccat 34648133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 10443628 - 10443582
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttca 275  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||    
T  10443628 ttattatgcataagccatttccttatgcaccctgcataaacacttca 10443582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 8550529 - 8550569
Alignment:
Q  247 ttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  8550529 ttccttatgcaccgtgcataaacacttcacaaccatcagat 8550569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 10237368 - 10237420
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  10237368 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 10237420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 19784285 - 19784337
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  19784285 tgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagat 19784337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 41099196 - 41099248
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  41099196 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 41099248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 43690654 - 43690706
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  43690654 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 43690706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 7614094 - 7614133
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  7614094 tccttatgcaccatgcataaacacttcacaaccatcagat 7614133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 28698639 - 28698580
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgca-taaacacttcacaaccatcagat 287  Q
    |||||||||||||  ||||| ||||||||||||||| |||||| ||||||||||||||||    
T  28698639 ttattatgcataagccattttcttatgcaccctgcattaaacatttcacaaccatcagat 28698580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 32987484 - 32987445
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  32987484 tccttatgcaccgtgcataaacacttcacaaccatcagat 32987445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 15260892 - 15260854
Alignment:
Q  246 tttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  15260892 tttccttatgcaccgtgcataaacacttcacaaccatca 15260854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 34633363 - 34633321
Alignment:
Q  245 atttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  34633363 atttccttatgcaccgtgcataaacacatcacaaccatcagat 34633321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 4836738 - 4836701
Alignment:
Q  250 cttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||| |||||||||||||||||||||||||||    
T  4836738 cttatgcaccgtgcataaacacttcacaaccatcagat 4836701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 287
Target Start/End: Complemental strand, 4842183 - 4842146
Alignment:
Q  250 cttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||| |||||||||||||||||||||||||||    
T  4842183 cttatgcaccgtgcataaacacttcacaaccatcagat 4842146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 5874613 - 5874654
Alignment:
Q  51 ttatacagtcagcatgccacatcaaccaaaatgcacagtcag 92  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  5874613 ttatacagtcagcgtgccacatcaacgaaaatgcacagtcag 5874654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 15227044 - 15227096
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| | |||||||||||||    
T  15227044 tgcataagttatttccttatgcaccgtgcataaacacattacaaccatcagat 15227096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 41451119 - 41451171
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  |||||||||||||||| ||||||||||| |||||| ||||||||    
T  41451119 tgcataagccatttccttatgcaccgtgcataaacacgtcacaatcatcagat 41451171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 23396491 - 23396538
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccat 282  Q
    |||||||  |||||||||||||||| ||||||||||||| ||||||||    
T  23396491 tgcataagccatttccttatgcaccgtgcataaacactttacaaccat 23396538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 39022001 - 39022040
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  39022001 tccttatgcaccgtgcataaacacttcacaatcatcagat 39022040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 42433727 - 42433766
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  42433727 tccttatgcaccgtgcataagcacttcacaaccatcagat 42433766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 35302629 - 35302591
Alignment:
Q  244 catttccttatgcaccctgcataaacacttcacaaccat 282  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  35302629 cattttcttatgcaccgtgcataaacacttcacaaccat 35302591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 1150075 - 1150026
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||||| | ||| ||||||||||| ||||||||||| ||||||||||||    
T  1150075 tgcataagttattcccttatgcaccgtgcataaacacatcacaaccatca 1150026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 1671801 - 1671868
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaa---cacttcacaaccatcagat 287  Q
    ||||| |||||||||||||| ||||| |||||||||| ||| ||||   |||||||||| ||||||||    
T  1671801 caaaagttattatgcataaaacattttcttatgcaccatgcttaaacatcacttcacaatcatcagat 1671868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 7058142 - 7058175
Alignment:
Q  250 cttatgcaccctgcataaacacttcacaaccatc 283  Q
    |||||||||| |||||||||||||||||||||||    
T  7058142 cttatgcaccgtgcataaacacttcacaaccatc 7058175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 44509110 - 44509061
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||||||||||| ||| |||| ||||||||||| | |||||||||||||    
T  44509110 ttattatgcataagtcagttccatatgcaccctgtagaaacacttcacaa 44509061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 29842141 - 29842109
Alignment:
Q  42 taaaattatttatacagtcagcatgccacatca 74  Q
    |||||||| ||||||||||||||||||||||||    
T  29842141 taaaattaattatacagtcagcatgccacatca 29842109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 40462318 - 40462270
Alignment:
Q  174 gtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    |||||||||||||  || | |||| ||||||||||||||||||||||||    
T  40462318 gtaaaccaaaagtcacccatatggcaggggggtaaaagcctattaaccc 40462270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 16668858 - 16668794
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  16668858 caaaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaaccatcagat 16668794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 33868157 - 33868217
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatc 283  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33868157 caaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatc 33868217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 29876084 - 29876013
Alignment:
Q  86 cagtcagatgctgactattgactgtggggggtaaaccaaggaatctgtatattacaagtgggaatctacaag 157  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  29876084 cagtcagacgctgactattggctttggggggtaaaccaaggaatcttcatattacaagtgggaatctacaag 29876013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 4674968 - 4675025
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcaga 286  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4674968 ttattatgcgtaagtcatttccttatgcaccctgcataaacacttcacaaccatcaga 4675025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 16552703 - 16552642
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  16552703 caaaagttattatgcataagtcatttccttatgcaccatgcataaacacttcacaaccatca 16552642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 18465620 - 18465556
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||| |||||||||||||  |||||| ||||||| |||||||||||||||||||||||||||||    
T  18465620 caaaagttattatgcataagacatttcattatgcatcctgcataaacacttcacaaccatcagat 18465556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 39056516 - 39056461
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  39056516 caaaagttattatgcataaatcattttcttatgcaccctgcttaaacacttcacaa 39056461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 7183145 - 7183194
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||||||||    
T  7183145 ttattatgcataagtcagttccttatgcacactgcataaacacttcacaa 7183194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 13552997 - 13553049
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  13552997 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 13553049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 14940408 - 14940356
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  14940408 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 14940356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 15416678 - 15416730
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||    
T  15416678 tgcataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 15416730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 30783449 - 30783501
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| ||||||||||||||||| ||||||||||| || ||||||||||||    
T  30783449 tgcataagtcatttccttatgcaccgtgcataaacacatcgcaaccatcagat 30783501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 32953235 - 32953159
Alignment:
Q  86 cagtcagatgctgactattgactgt-----ggggggtaaaccaaggaatctgtatattacaagtgggaatctacaag 157  Q
    |||||||||||||||||||| || |     |||||||||||||||||||||  ||||||||||||| ||||||||||    
T  32953235 cagtcagatgctgactattggctttgggtgggggggtaaaccaaggaatcttcatattacaagtggaaatctacaag 32953159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 13362796 - 13362835
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  13362796 tccttatgcaccgtgcataaacacttcacaaccatcagat 13362835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 25017256 - 25017217
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  25017256 tccttatgcaccgtgcataaacacttcacaaccatcagat 25017217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 32958033 - 32958100
Alignment:
Q  86 cagtcagatgctgactattgactgtggggggtaaaccaaggaatctgtatattacaagtgggaatcta 153  Q
    |||||||||||||| |||||||||| |||||||||| | |||||||   ||||||||||| |||||||    
T  32958033 cagtcagatgctgattattgactgtagggggtaaactagggaatctccctattacaagtgagaatcta 32958100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 3884087 - 3884038
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatca 284  Q
    ||||||| ||||||||||||||||| ||||||||||| | ||||||||||    
T  3884087 tgcataagtcatttccttatgcaccgtgcataaacacattacaaccatca 3884038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 15913189 - 15913140
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| ||||    
T  15913189 ttattatgcataagtcagttccttatgcatcctgcataaacactttacaa 15913140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 14394482 - 14394534
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| | ||||||||||||||| |||||||| || |||||||||||||||    
T  14394482 tgcataagttatttccttatgcaccgtgcataaatacatcacaaccatcagat 14394534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 26637889 - 26637837
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  ||||| |||||||||| ||||||||||| |||||||||||||||    
T  26637889 tgcataagccattttcttatgcaccgtgcataaacacatcacaaccatcagat 26637837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 34329156 - 34329192
Alignment:
Q  251 ttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||||| |||||||||||||||||||||||||||    
T  34329156 ttatgcaccgtgcataaacacttcacaaccatcagat 34329192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 28070192 - 28070153
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  28070192 tccttatgcaccgtgcataaacacttcacaactatcagat 28070153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 287
Target Start/End: Original strand, 37456703 - 37456746
Alignment:
Q  244 catttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||||||| | ||||||||| |||||||||||||||    
T  37456703 catttccttatgcaccgtacataaacacatcacaaccatcagat 37456746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 42512225 - 42512264
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  42512225 tccttatccaccgtgcataaacacttcacaaccatcagat 42512264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 5699916 - 5699875
Alignment:
Q  51 ttatacagtcagcatgccacatcaaccaaaatgcacagtcag 92  Q
    ||||||||||||| |||||||||| | |||||||||||||||    
T  5699916 ttatacagtcagcgtgccacatcagcaaaaatgcacagtcag 5699875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 1606 - 1661
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1606 caaaaattattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 1661  T

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Target: scaffold0069 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 51361 - 51416
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  51361 caaaaattattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 51416  T

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Target: scaffold0006 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 171507 - 171562
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  171507 caaaaattattatgcataagtcatttccttatgcaccctgtataaacacttcacaa 171562  T

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Target: scaffold0006; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 209328 - 209383
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  209328 caaaagttattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 209383  T

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Target: scaffold0049 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 3332 - 3404
Alignment:
Q  86 cagtcagatgctgactattgactgtgggg-ggtaaaccaaggaatctgtatattacaagtgggaatctacaag 157  Q
    |||||||| ||||||||||| || ||||| |||||||||||||||||  ||||||||||||||||||||||||    
T  3332 cagtcagacgctgactattggctttggggaggtaaaccaaggaatcttcatattacaagtgggaatctacaag 3404  T

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Target: scaffold0049; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 1273 - 1200
Alignment:
Q  86 cagtcagatgctgactattgactgtgggggg--taaaccaaggaatctgtatattacaagtgggaatctacaag 157  Q
    |||||||| ||||||||||| || |||||||  |||||||||||||||  |||||||||||||||||| |||||    
T  1273 cagtcagacgctgactattggctttggggggggtaaaccaaggaatcttcatattacaagtgggaatcgacaag 1200  T

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Target: scaffold0049; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 434 - 386
Alignment:
Q  174 gtaaaccaaaagttccctaaatggtaggggggtaaaagcctattaaccc 222  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  434 gtaaaccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 386  T

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Target: scaffold0717 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 7400 - 7351
Alignment:
Q  229 ttattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||    
T  7400 ttattatgcataaatcagatccttatgcaccctgcataaacacttcacaa 7351  T

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Target: scaffold0571 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 728 - 676
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  728 tgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagat 676  T

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Target: scaffold0071 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 22595 - 22453
Alignment:
Q  88 gtcagatgctgactattgactgtggggggtaaaccaaggaatctgtatattacaagtgggaatctacaag---nnnnnnnnacaggggtgtaaaccaaaa 184  Q
    |||||||||||||| ||| |||||||||||||||||| |||||| ||| ||||| | | |||||| ||||           | ||||| |||||||||||    
T  22595 gtcagatgctgactgttggctgtggggggtaaaccaaagaatctctattttacaggggagaatctccaagttttttttttcataggggggtaaaccaaaa 22496  T
Q  185 gttccctaaatggtaggggggtaaaagcctattaaccccaaaa 227  Q
    |  ||| ||||||  ||||||||||||||||||||||| ||||    
T  22495 gacccccaaatggcgggggggtaaaagcctattaaccctaaaa 22453  T

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Target: scaffold0071; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 23582 - 23654
Alignment:
Q  86 cagtcagatgctgactattgactgt-ggggggtaaaccaaggaatctgtatattacaagtgggaatctacaag 157  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||| ||| ||||| | |||||||| ||||    
T  23582 cagtcagatgctgactattgactgtgggggggtaatccaaagaatctctattttacaggggggaatctccaag 23654  T

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Target: scaffold0045 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 33698 - 33750
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  33698 tgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagat 33750  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 450204 - 450256
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttca 275  Q
    ||||| ||||||||||||| |||||||||||| |||| |||||||||||||||    
T  450204 caaaagttattatgcataagtcatttccttatacaccttgcataaacacttca 450256  T

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Target: scaffold0238 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 25271 - 25232
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  25271 tccttatgcaccgtgcataaacacttcacaaccatcagat 25232  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 119204 - 119259
Alignment:
Q  223 caaaaattattatgcataaatcatttccttatgcaccctgcataaacacttcacaa 278  Q
    ||||| ||||||| ||||| |||||||  |||||||||||||||||||||||||||    
T  119204 caaaagttattatacataagtcatttctatatgcaccctgcataaacacttcacaa 119259  T

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Target: scaffold0652 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 6812 - 6767
Alignment:
Q  86 cagtcagatgctgactattgactgtggggggtaaaccaaggaatct 131  Q
    |||||||| |||||| ||||||| ||||||||||||||||||||||    
T  6812 cagtcagaagctgacaattgactttggggggtaaaccaaggaatct 6767  T

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Target: scaffold0581 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 8473 - 8421
Alignment:
Q  235 tgcataaatcatttccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||||||  |||||||||||||||  ||||||||||| |||||||||||||||    
T  8473 tgcataagccatttccttatgcactgtgcataaacacatcacaaccatcagat 8421  T

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Target: scaffold0544 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 10714 - 10675
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  10714 tccttatacaccgtgcataaacacttcacaaccatcagat 10675  T

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Target: scaffold0136 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 35761 - 35718
Alignment:
Q  49 atttatacagtcagcatgccacatcaaccaaaatgcacagtcag 92  Q
    ||||||||| |||||||||||||||||| ||||||||| |||||    
T  35761 atttatacaatcagcatgccacatcaacaaaaatgcactgtcag 35718  T

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Target: scaffold0097 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 13639 - 13678
Alignment:
Q  248 tccttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  13639 tccttatccaccgtgcataaacacttcacaaccatcagat 13678  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 14992 - 14951
Alignment:
Q  51 ttatacagtcagcatgccacatcaaccaaaatgcacagtcag 92  Q
    ||||||||||||| |||||||||| | |||||||||||||||    
T  14992 ttatacagtcagcgtgccacatcagcgaaaatgcacagtcag 14951  T

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Target: scaffold0337 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 7046 - 7082
Alignment:
Q  251 ttatgcaccctgcataaacacttcacaaccatcagat 287  Q
    |||| |||| |||||||||||||||||||||||||||    
T  7046 ttatacaccgtgcataaacacttcacaaccatcagat 7082  T

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