View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_33 (Length: 416)

Name: NF3229_low_33
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_33
NF3229_low_33
[»] chr1 (5 HSPs)
chr1 (19-299)||(40399532-40399812)
chr1 (320-406)||(40399451-40399537)
chr1 (54-151)||(44188383-44188480)
chr1 (45-92)||(22536086-22536133)
chr1 (75-127)||(344309-344361)
[»] chr2 (1 HSPs)
chr2 (39-136)||(13280310-13280407)
[»] chr8 (7 HSPs)
chr8 (42-137)||(27183123-27183218)
chr8 (42-136)||(27231068-27231162)
chr8 (63-119)||(18140245-18140301)
chr8 (232-279)||(24465731-24465778)
chr8 (48-106)||(24465554-24465612)
chr8 (52-119)||(12724027-12724094)
chr8 (61-119)||(18095604-18095662)
[»] chr5 (2 HSPs)
chr5 (48-151)||(9763536-9763639)
chr5 (62-121)||(42261539-42261598)
[»] scaffold0129 (1 HSPs)
scaffold0129 (53-129)||(9622-9698)
[»] chr4 (1 HSPs)
chr4 (62-124)||(4876024-4876086)
[»] chr3 (1 HSPs)
chr3 (46-100)||(15861804-15861858)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 40399812 - 40399532
Alignment:
Q  19 ccttgtctattctctctaaacttaagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaa 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40399812 ccttgtctattctctttaaacttaagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaa 40399713  T
Q  119 tatcatttccaaatctcattcactctacgatgaaaatgacgcgtgtctccttctaagcgcttgcgactatcattgcaatttgtattttactttctgattc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  40399712 tatcatttccaaatctcattcactctacgatgaaaatgacgcgtgtctccttctaagcgcttacgaatatcattgcaatttgtattttactttctgattc 40399613  T
Q  219 tgatgatagcagctttgagattaaagagaaattggatttaccacctccatttcatattcaaagtactcttattcgtacttt 299  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40399612 tgatgatagctgctttgagattaaagagaaattggatttaccacctccatttcatattcaaagtactcttattcgtacttt 40399532  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 40399537 - 40399451
Alignment:
Q  320 tactttgtatttatgacaatgataagcatttaactgttgaattatggaatccttctacgaaggagattaaggtcattcattccctct 406  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  40399537 tactttgtatttatgacaatgataagcatttaactgttggattatggaatcctgctacgaaggagattaaggtcattcattccctct 40399451  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 44188480 - 44188383
Alignment:
Q  54 tgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctcattcactctacgatga 151  Q
    ||||||| |||||||||| |  | ||| | ||||||||||||||| | || |||| |||| ||||| ||||||||||||||||| ||||||| |||||    
T  44188480 tgtgttcgcaaatcatggtcattgttacttgaaaaccctaatttcttcaaaatgttccgcgacaatctcatttccaaatctcatccactctatgatga 44188383  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 22536133 - 22536086
Alignment:
Q  45 cgattttcttgtgttcacaaatcatggactcttttattcgaaaaccct 92  Q
    |||||| |||| ||||| ||||||||| ||||||||||||||||||||    
T  22536133 cgatttacttgcgttcaaaaatcatggtctcttttattcgaaaaccct 22536086  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 344309 - 344361
Alignment:
Q  75 cttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttc 127  Q
    |||||||| |||||||||||||| |||||||||||  | |||||| |||||||    
T  344309 cttttatttgaaaaccctaattttatgaacatgtattgtaacaatttcatttc 344361  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 13280310 - 13280407
Alignment:
Q  39 cttaagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctca 136  Q
    ||||| || ||| ||||||||| |||||||||| ||| |||||| |||||||||| |||||||||||||| |||||||||| |  |||||||||||||    
T  13280310 cttaaacgctttgcttgtgttcgcaaatcatggtctcatttatttgaaaaccctattttcatgaacatgttccgcaacaatcttgtttccaaatctca 13280407  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 27183123 - 27183218
Alignment:
Q  42 aagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctcat 137  Q
    ||||||||| ||||||||  |||||||||| ||||||||||  |||||||||||||||| ||| ||| |||||||||| |  ||||||||||||||    
T  27183123 aagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttccgcaacaatcttgtttccaaatctcat 27183218  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 27231162 - 27231068
Alignment:
Q  42 aagcgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctca 136  Q
    ||||||||| ||||||||  |||||||||| ||||||||||  |||||||||||||||| ||| ||| |||||||||| |  |||||||||||||    
T  27231162 aagcgatttacttgtgtttccaaatcatggtctcttttatttcaaaaccctaatttcatcaacttgttccgcaacaatcttgtttccaaatctca 27231068  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 18140301 - 18140245
Alignment:
Q  63 aaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaat 119  Q
    ||||||||| | ||||||||| |||||||||||||||||||||||| ||||| ||||    
T  18140301 aaatcatggtcacttttattccaaaaccctaatttcatgaacatgttccgcaccaat 18140245  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 24465731 - 24465778
Alignment:
Q  232 tttgagattaaagagaaattggatttaccacctccatttcatattcaa 279  Q
    ||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  24465731 tttgagaataaagtgaaattggatttgccacctccatttcatattcaa 24465778  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 24465554 - 24465612
Alignment:
Q  48 ttttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacat 106  Q
    ||||||||||||| |||||||||||||| | |||| ||||||| ||||||||| |||||    
T  24465554 ttttcttgtgttcgcaaatcatggactcgtctattagaaaaccataatttcatcaacat 24465612  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 12724027 - 12724094
Alignment:
Q  52 cttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaat 119  Q
    |||||| ||| ||||||||| ||||||| ||| ||||| ||| |||||||||||||| ||||| ||||    
T  12724027 cttgtgctcaaaaatcatggtctcttttgttccaaaactctattttcatgaacatgttccgcaccaat 12724094  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 18095604 - 18095662
Alignment:
Q  61 acaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaat 119  Q
    ||||||||||| | ||| | ||| |||||||||||||||||||||||| ||||| ||||    
T  18095604 acaaatcatggtcacttcttttccaaaaccctaatttcatgaacatgttccgcaccaat 18095662  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 9763536 - 9763639
Alignment:
Q  48 ttttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttccaaatctcattcactctacg 147  Q
    ||||||||||||| |||||||||| ||||||| || |||||||||| ||| ||||||||||  |||| |||| |||| | |||||||||| ||||||| |    
T  9763536 ttttcttgtgttcgcaaatcatggtctcttttgtttgaaaaccctatttttatgaacatgtttcgcaccaatctcatattcaaatctcatccactctatg 9763635  T
Q  148 atga 151  Q
    ||||    
T  9763636 atga 9763639  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 42261539 - 42261598
Alignment:
Q  62 caaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatat 121  Q
    |||||||||| |||| |||||||||||||| |||||||| || |||||| ||||||||||    
T  42261539 caaatcatggtctctcttattcgaaaaccccaatttcattaagatgtactgcaacaatat 42261598  T

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Target: scaffold0129 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 9622 - 9698
Alignment:
Q  53 ttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcatttcca 129  Q
    |||||| || ||||||||| |||  ||||| |||||||||||||||||||||||||| || |||||| |||| ||||    
T  9622 ttgtgtacataaatcatggtctcgcttatttgaaaaccctaatttcatgaacatgtatcgtaacaatgtcatatcca 9698  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 4876024 - 4876086
Alignment:
Q  62 caaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatatcat 124  Q
    |||||||| | ||||||||||  |||||||||||||||||||||||| ||||| |||| ||||    
T  4876024 caaatcatcgtctcttttatttcaaaaccctaatttcatgaacatgttccgcaccaatttcat 4876086  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 15861858 - 15861804
Alignment:
Q  46 gattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcat 100  Q
    |||||||||| | || ||||| |||| |||||||||| |||||||||||||||||    
T  15861858 gattttcttgcgctcgcaaattatggtctcttttatttgaaaaccctaatttcat 15861804  T

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