View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_34 (Length: 410)
Name: NF3229_low_34
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 50177500 - 50177094
Alignment:
| Q |
18 |
caatttggtcataattttaatataatgttacgatcaggaacagattcaacgcttgaaataacactgcaaaacatcaatggataacccatcttatttagat |
117 |
Q |
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| T |
50177500 |
caatttggtcataattttaatataatgttacgatcaggaacagattcaacgcttgaaataacactgcaaaacatcaatggataacccatcttatttagat |
50177401 |
T |
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| Q |
118 |
gattataaaaaattaatcaaaatttagaccctctttttactttatgctaaagaacaataaatattagttttgcttacttattgcatacaatggaggattc |
217 |
Q |
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| T |
50177400 |
gattataaaaaattaatcaaaatttagaccctctttttactttatgctaaagaaaaataaatattagttttgcttacttattgcatacaatggaggattc |
50177301 |
T |
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| Q |
218 |
-----------------cctccagttctttatgcatcatcataatcactttattgataccaaattgtgtgtaagcaaaaagaaagttgatcattgataca |
300 |
Q |
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| T |
50177300 |
acctactatttcaagttcttccagttctttatgcatcatcataatcactttattgataccaaattgtgtgtaagcaaaaagaaagttgatcattgataca |
50177201 |
T |
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| Q |
301 |
aagtag----taattacgtgtgtgttaaaataataaataagtggttgacctggatgatgtcaatctgattattaagattggatatggcaactttcatcct |
396 |
Q |
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| T |
50177200 |
aagtagtaattaattatgtgtgtgttaaaataataaataagtggttgacctggatgatgtcaatctgattattaagattggatatggcaactttcatcct |
50177101 |
T |
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| Q |
397 |
atgcttc |
403 |
Q |
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| T |
50177100 |
atgcttc |
50177094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 54322078 - 54322137
Alignment:
| Q |
49 |
gatcaggaacagattcaacgcttgaaataacactgcaa-aacatcaatggataacccatc |
107 |
Q |
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| T |
54322078 |
gatcaagaacagattcaacgcttgaaataacactgcaagaacatcaatggataacccatc |
54322137 |
T |
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