View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_35 (Length: 409)
Name: NF3229_low_35
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 7675245 - 7674863
Alignment:
| Q |
11 |
caaagggccataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggt |
110 |
Q |
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| T |
7675245 |
caaagggccataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggt |
7675146 |
T |
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| Q |
111 |
gggagtggtagtgatgaagttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatga |
210 |
Q |
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| T |
7675145 |
gggagtggtagtgatgaagttcttgttgcaaacttcaccaaacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatga |
7675046 |
T |
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| Q |
211 |
tttgtgttgtgttgtgactacgattatgaagatgatgtagtccaaggatatgtggttgtgtaaaacaacaacaatctatatttataaagctaagcctcga |
310 |
Q |
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| T |
7675045 |
tttgtgttgtgttgtgactatgattatgaagatgatgtagtccaaggatatgtggttgtgtaaaacaacaacaatctatatttataaagctaagcctcga |
7674946 |
T |
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| Q |
311 |
tgcttgctatatttataaaggaaacgtttcctcgactgtgcaattatattggaaaattattagtaaattcttttagtactttt |
393 |
Q |
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| T |
7674945 |
tgcttgctatatttataaaggaaacgtttcctcgactgtgcaattatattggaaaattattagtaaattcttttagtactttt |
7674863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 30 - 209
Target Start/End: Complemental strand, 7659599 - 7659420
Alignment:
| Q |
30 |
gccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtggtagtgatgaag |
129 |
Q |
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| T |
7659599 |
gccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtggtagtgatgaag |
7659500 |
T |
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| Q |
130 |
ttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatg |
209 |
Q |
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| T |
7659499 |
atctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatg |
7659420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 7624068 - 7624265
Alignment:
| Q |
12 |
aaagggccataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtg |
111 |
Q |
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| T |
7624068 |
aaagggccatggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtg |
7624167 |
T |
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| Q |
112 |
ggagtggtagtgatgaagttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatg |
209 |
Q |
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| T |
7624168 |
gaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctattgcaatgaaccatagagacatg |
7624265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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