View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_37 (Length: 407)
Name: NF3229_low_37
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 397
Target Start/End: Original strand, 33739008 - 33739403
Alignment:
| Q |
7 |
gtttcaataaaagtaaaaagggttttagatttagtagcaaatttagggagatcatgtacaagatttaatctttcaaattcaatggttaattgttaatatt |
106 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33739008 |
gtttcaataaaagtaaaaagggttttagatttagtcgaaaatttagggagatcatgtacaagatttaaactttcaaattcaatggttaattgttaatatt |
33739107 |
T |
|
| Q |
107 |
tatattgtcgtccttatagc--ataaataatgaaacaggctacggagttttgcttttgatctc-------ttatgtagttcgacgctatcttggcgcata |
197 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33739108 |
tatattgtcgtccttatagcatataaataatgaaacaggctacggagttttgcttttgatctctacagggttatgtagttcgacgctatcttggcgcata |
33739207 |
T |
|
| Q |
198 |
tttgatgaagttacannnnnnnnnnnngaatcagcaaaagtttttcaaagcatagtccgtgcaagacgcacaacaataatcataattaatttggttaatt |
297 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
33739208 |
tttgatgaagttacattttttctttttgaatcagcaaaagtttttcaaagcatagcccgtgcaagacgcacaacgataatcacaattaatttggttaatt |
33739307 |
T |
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| Q |
298 |
taattggtttaatatttatattgtcatccttataacataaataaggaaacatgcatccagcctacaggcgttttgcgcttgatctctgcaagggtctgtg |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33739308 |
taattggtttaatatttatattgtcatccttataacataaataaggaaacatg----cagcctacaggcgttttgcgcttgatctctgcaagggtgtgtg |
33739403 |
T |
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