View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_39 (Length: 398)
Name: NF3229_low_39
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 36025321 - 36024945
Alignment:
| Q |
17 |
catgaacaagatttgaagcagagcaaagacaaattgcaaaaatggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36025321 |
catgaacaagatttgaagcagagcaaagacaaattgcaaaaatggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaattaca |
36025222 |
T |
|
| Q |
117 |
agtaaataaaataaattatacatcttttattcatgtcatgactctgtttccaaagttttaatatatataactacttcaaatcatgttcatcttttgtttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025221 |
agtaaataaaataaattatacatcttttattcatgtcatgactctgtttccaaagttttaatatatataactacttcaaatcatgttcatcttttgtttt |
36025122 |
T |
|
| Q |
217 |
ctattttttaattctatatatgaataaaatagaagtttaaaacattcattatcttctctctgtctttgatttatcactttttgaaataatttatgttcct |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025121 |
ctattttttaattctatatatgaataaaatagaagtttaaaacattcattatcttctctctgtctttgatttatcactttttgaaataatttatgttcct |
36025022 |
T |
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| Q |
317 |
ttcttgttctacaatcttggtcataaattttatgtaattaatatatgcagaacaagaatgttgaccttcatctctct |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
36025021 |
ttcttgttctacaatcttggtcataaattttatgtaattaatatatgcacaacaagaatgttgaccttcatttctct |
36024945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 36017213 - 36017111
Alignment:
| Q |
27 |
atttgaagcagagcaaagacaaattgcaaaaatggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaataaa |
126 |
Q |
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|||||||||| | ||||||||| ||||| |||| ||||||||||||||| ||||| |||| |||| |||||||| ||| ||||||| | ||||||||| |
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| T |
36017213 |
atttgaagcacaacaaagacaagttgcagaaatagaaagatgctctcactgaagcagccactttatctgggtggcactatcaaaattcaaggtaaataaa |
36017114 |
T |
|
| Q |
127 |
ata |
129 |
Q |
| |
|
||| |
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|
| T |
36017113 |
ata |
36017111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 36034119 - 36034017
Alignment:
| Q |
27 |
atttgaagcagagcaaagacaaattgcaaaaatggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaataaa |
126 |
Q |
| |
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|||||||||| | ||||||||| ||||| |||| ||||||||||||||| ||||| |||| |||| |||||||| ||| ||||||| | ||||||||| |
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| T |
36034119 |
atttgaagcacaacaaagacaagttgcagaaatagaaagatgctctcactgaagcagccactttatctgggtggcactatcaaaattcaaggtaaataaa |
36034020 |
T |
|
| Q |
127 |
ata |
129 |
Q |
| |
|
||| |
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|
| T |
36034019 |
ata |
36034017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 36004552 - 36004455
Alignment:
| Q |
25 |
agatttgaagcagagcaaagacaaattgcaaaaatggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaa |
122 |
Q |
| |
|
|||||||||||||| |||||| | || | ||||||||||||||||| || ||||| ||||||||||| |||||| ||||||||||| ||| ||||| |
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| T |
36004552 |
agatttgaagcagaacaaagaaatgttaaagaaatggaaagatgctctaactgaagcagccaatttagcagggtggcactctcaaaattacaggtaaa |
36004455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 12894878 - 12894983
Alignment:
| Q |
23 |
caagatttgaagcagagcaaagacaaattgcaaaaatggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaa |
122 |
Q |
| |
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|||||||||||||| ||||||| | || |||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||| ||||| |
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| T |
12894878 |
caagatttgaagcacggcaaagatatgttacaaaaatggaaagatgctctcattgaagcagccaatttagctgggtggcactctcaaaattacaggtaaa |
12894977 |
T |
|
| Q |
123 |
taaaat |
128 |
Q |
| |
|
|||||| |
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|
| T |
12894978 |
taaaat |
12894983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 16334938 - 16335038
Alignment:
| Q |
41 |
aaagacaaattgcaaaaatggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaataaaataaattatacatc |
140 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||| ||||| | ||||||||||| |||||| |||| |
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| T |
16334938 |
aaagacaacttgcaaaaatggaaagatgctctcaccgaagtctccaaattatctgggtgggactctaaaaattcaaggtaaataaaatgaattatccatc |
16335037 |
T |
|
| Q |
141 |
t |
141 |
Q |
| |
|
| |
|
|
| T |
16335038 |
t |
16335038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 16124713 - 16124628
Alignment:
| Q |
56 |
aaatggaaagatgctctcaccgaagctgccaatttagctgggtggtactctcaaaatcacaagtaaataaaataaattatacatct |
141 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| ||||| ||| | | ||||||||||| |||||| ||||| |
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| T |
16124713 |
aaatggaaagatgctctcaccgaagtctccaatttatctgggtgggactctaaaagttcaaggtaaataaaatgaattatccatct |
16124628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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