View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_40 (Length: 398)
Name: NF3229_low_40
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Complemental strand, 21763031 - 21762658
Alignment:
| Q |
8 |
aatatggaaagaggggcaatgttctacaaatatggtcgtcgaattgtgggtagtgtataattgtgttcatattctatgtttaataacattacaaacttta |
107 |
Q |
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| T |
21763031 |
aatatggaaagaggggcactgttctacaaatatggtcgtcgaattgtggttagtgtataattgtgttcatattctatgtttaataacattacaaacttta |
21762932 |
T |
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| Q |
108 |
attaaagtgcattcggaaaaaagttaaattctaaataaaatacaatataaaagaagtggtccaaagtgattgaataccccaatttttaggtgagttttac |
207 |
Q |
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| T |
21762931 |
attaaagtgcattcggaaaaa-gttaaattctaaataaaatacaatataaaagaagtggtccaaagtgattgaataccccaatttttaggtgagttttac |
21762833 |
T |
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| Q |
208 |
gaatttgtcaatatattactttgctcgtgtttaatggttgaattttagcatgagaacgcattttttatgctaaaattttattgaagtttatcaactaata |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21762832 |
gaatttgtcaatatattactttgctcgtgtttaatggttgaattttagcttgagaacgcattttttatgctaaatttttattgaagtttatcaactaata |
21762733 |
T |
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| Q |
308 |
aattatgtgtttgcaagaaaatttgcatcataatgtcatgaaaattttaatataaaagaaattatctataccaaa |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21762732 |
aattatgtgtttgcaagaaaatttgcatcataatgtcatgaaaattttaatataaaagaaattatctaaaccaaa |
21762658 |
T |
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