View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_42 (Length: 392)
Name: NF3229_low_42
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 53986680 - 53987038
Alignment:
| Q |
16 |
atgaccttaatgattnnnnnnntacaaattttgaattaaaataattcgaggactaaatcatatttaaatgttgttgttattagggtttatggttacatat |
115 |
Q |
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| T |
53986680 |
atgaccttaatgattaaaaaaatacaaattttgaattaaaataattcgaggactaaatcatatttaaatgttgttgttattagggtttatggttacatat |
53986779 |
T |
|
| Q |
116 |
attttttccttnnnnnnntggttaaacaannnnnnngttaatttaaatttacaactcctattaaaaaagttgtatcagctagctataaaacgtttgtaac |
215 |
Q |
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| T |
53986780 |
atttcttccttaaaaaaatggttaaacaatttttttgttaatttaaatttacaactcctattaaaaaagttgtaccagctagctataaaacgtttgcaac |
53986879 |
T |
|
| Q |
216 |
aagtgaaatctataatgaaatttaaatggtaaatgtgaactgttaagtctgataggacaaaatggaaatctctgtttcttatagaaagagggcaatttaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
53986880 |
aagtgaaatctataatgaaatttaaatggtaaatgtgaactgttaagtctgataggacaaaatggaaatctctgtttgttatagaaagagggcaatttaa |
53986979 |
T |
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| Q |
316 |
tgatattccagacacaggcagtccttttcacaactgtgctcgtgcgtcgcctcgtgtac |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53986980 |
tgatattccagacacaggcagtccttttcacaactgtgttcgtgcgtcgcctcgtgtac |
53987038 |
T |
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