View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_45 (Length: 390)

Name: NF3229_low_45
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_45
NF3229_low_45
[»] chr6 (5 HSPs)
chr6 (61-273)||(15101851-15102064)
chr6 (321-386)||(15102208-15102273)
chr6 (328-386)||(32362672-32362730)
chr6 (327-386)||(17720430-17720489)
chr6 (18-66)||(15101051-15101099)
[»] chr8 (3 HSPs)
chr8 (328-386)||(29722371-29722429)
chr8 (339-385)||(13638290-13638336)
chr8 (339-385)||(13738703-13738749)
[»] chr7 (2 HSPs)
chr7 (328-386)||(14746758-14746816)
chr7 (328-386)||(38076860-38076918)
[»] chr4 (1 HSPs)
chr4 (328-386)||(28732346-28732404)
[»] chr3 (4 HSPs)
chr3 (328-386)||(52195085-52195143)
chr3 (328-377)||(53272696-53272745)
chr3 (328-386)||(38356167-38356225)
chr3 (330-386)||(1660536-1660592)
[»] chr2 (2 HSPs)
chr2 (328-386)||(856240-856298)
chr2 (328-386)||(3704333-3704391)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 61 - 273
Target Start/End: Original strand, 15101851 - 15102064
Alignment:
Q  61 atgataacaacatagtacacaagaatatttgaagaggaagaagaaagaagttgataaagaaaggttaaatttctttaatctatttatttgaaaaggtatt 160  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15101851 atgataacagcagagtacaaaagaatatttgaagaggaagaagaaagaagttgataaagaaaggttaaatttctttaatctatttatttgaaaaagtatt 15101950  T
Q  161 tatttctcagttcatcgaaaacaacatcctaaaagatcag-atatgaaacacctcttatataaaatagatcagaatatgaaataccccttaccaatgact 259  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15101951 tatttctcagttcatcgaaaacaacatcctaaaagatcagaatataaaacacctcttatataaaatagatcagaatatgaaataccccttaccaatgact 15102050  T
Q  260 tctccaattcttgt 273  Q
    ||||||||||||||    
T  15102051 tctccaattcttgt 15102064  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 15102208 - 15102273
Alignment:
Q  321 gttgtaatgaaagctaataatgccaactttgtttatgacacgagtagatggtggtcgaacccgtta 386  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| ||||||||    
T  15102208 gttgtaatgaaagctaacaatgccaactttatttatggcacgagtagatggtggtcggacccgtta 15102273  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 386
Target Start/End: Complemental strand, 32362730 - 32362672
Alignment:
Q  328 tgaaagctaataatgccaactttgtttatgacacgagtagatggtggtcgaacccgtta 386  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  32362730 tgaaagctaacaatgccaactttgtttatggcacgagtagatggtggtcggacccgtta 32362672  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 327 - 386
Target Start/End: Complemental strand, 17720489 - 17720430
Alignment:
Q  327 atgaaagctaataatgccaactttgtttatgacacgagtagatggtggtcgaacccgtta 386  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  17720489 atgaaagctaaccatgccaactttgtttatggcacgagtagatggtggtcggacccgtta 17720430  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 15101051 - 15101099
Alignment:
Q  18 tttaggtccttatgaatatatattaacggtccagaaataaatcatgata 66  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  15101051 tttaggtccttataaatatatattgacggtccagaaataaatcatgata 15101099  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 29722371 - 29722429
Alignment:
Q  328 tgaaagctaataatgccaactttgtttatgacacgagtagatggtggtcgaacccgtta 386  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  29722371 tgaaagctaacaatgccaactttgtttatggcacgagtagatggtggtcggacccgtta 29722429  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 13638336 - 13638290
Alignment:
Q  339 aatgccaactttgtttatgacacgagtagatggtggtcgaacccgtt 385  Q
    |||||||| |||||||||| ||||| ||||||||||||| |||||||    
T  13638336 aatgccaagtttgtttatggcacgattagatggtggtcggacccgtt 13638290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 13738749 - 13738703
Alignment:
Q  339 aatgccaactttgtttatgacacgagtagatggtggtcgaacccgtt 385  Q
    |||||||| |||||||||| ||||| ||||||||||||| |||||||    
T  13738749 aatgccaagtttgtttatggcacgattagatggtggtcggacccgtt 13738703  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 386
Target Start/End: Complemental strand, 14746816 - 14746758
Alignment:
Q  328 tgaaagctaataatgccaactttgtttatgacacgagtagatggtggtcgaacccgtta 386  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  14746816 tgaaagctaacaatgccaactttgtttatggcacgagtagatggtggtcggacccgtta 14746758  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 38076860 - 38076918
Alignment:
Q  328 tgaaagctaataatgccaactttgtttatgacacgagtagatggtggtcgaacccgtta 386  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  38076860 tgaaagctaacaatgccaactttgtttatggcacgagtagatggtggtcggatccgtta 38076918  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 28732346 - 28732404
Alignment:
Q  328 tgaaagctaataatgccaactttgtttatgacacgagtagatggtggtcgaacccgtta 386  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  28732346 tgaaagctaacaatgccaactttgtttatggcacgagtagatggtggtcggacccgtta 28732404  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 52195085 - 52195143
Alignment:
Q  328 tgaaagctaataatgccaactttgtttatgacacgagtagatggtggtcgaacccgtta 386  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  52195085 tgaaagctaacaatgccaactttgtttatggcacgagtagatggtggtcggacccgtta 52195143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 53272696 - 53272745
Alignment:
Q  328 tgaaagctaataatgccaactttgtttatgacacgagtagatggtggtcg 377  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  53272696 tgaaagctaacaatgccaactttgtttatggcacgagtagatggtggtcg 53272745  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 38356167 - 38356225
Alignment:
Q  328 tgaaagctaataatgccaactttgtttatgacacgagtagatggtggtcgaacccgtta 386  Q
    |||||||||| ||||||||||||||||||| ||||| ||| ||||||||| ||| ||||    
T  38356167 tgaaagctaacaatgccaactttgtttatggcacgaataggtggtggtcggacctgtta 38356225  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 1660536 - 1660592
Alignment:
Q  330 aaagctaataatgccaactttgtttatgacacgagtagatggtggtcgaacccgtta 386  Q
    |||||||| |||| ||||||| |||||| ||||||||||||||| || || ||||||    
T  1660536 aaagctaacaatggcaactttatttatggcacgagtagatggtgatcaaatccgtta 1660592  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 856240 - 856298
Alignment:
Q  328 tgaaagctaataatgccaactttgtttatgacacgagtagatggtggtcgaacccgtta 386  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||| || |||||    
T  856240 tgaaagctaacaatgccaactttgtttatggcacgagtagatggtggtcggactcgtta 856298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 328 - 386
Target Start/End: Complemental strand, 3704391 - 3704333
Alignment:
Q  328 tgaaagctaataatgccaactttgtttatgacacgagtagatggtggtcgaacccgtta 386  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||||||| ||||||||    
T  3704391 tgaaagctaacaatgccaactttgtttatggcacgggtagatggtggtcggacccgtta 3704333  T

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