View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_47 (Length: 385)
Name: NF3229_low_47
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 36152206 - 36151825
Alignment:
| Q |
1 |
cataacttccccatacctttgctatatccgaattttgtgactcatgaaaggaagacagagggaataccttgttgctaagataaagataaaaggagatcac |
100 |
Q |
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| T |
36152206 |
cataacttccccatacctttgctatatccgaattttgtgactcatgaaaggaagacagagggaataccttgttgctaagataaagataaaaggagatcac |
36152107 |
T |
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| Q |
101 |
ggagaaggtaccttgaaaatcattaacactagcataccaatgcttgatcannnnnnnnnnnnnnnaaaggaacgctcgattattactcgtgtgttnnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
36152106 |
ggagaaggtaccttgaaaatcattaacactagcataccaatgcttgatcatttttaattttttttaaaggaacgctcgattattattcgtgtgttaaaaa |
36152007 |
T |
|
| Q |
201 |
nnctaaatacagaacctaagcccctcgtgtataaattagattcttttgtnnnnnnnnnnnngtattaattagattccaataatccataaaagaaatacaa |
300 |
Q |
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||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36152006 |
aactaaatacagaacctaaacccctcatgtataaattagattcttttgtaaaaaaaaaaaagtattaattagattccaataatccataaaagaaatacaa |
36151907 |
T |
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| Q |
301 |
attacaagttaccaaaacaaaatgaacaaataggaagaataaatagcagaaacatgttttttcaactttcaccctatgctac |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36151906 |
attacaagttaccaaaacaaaatgaacaaataggaagaataaatagcagaaacatgttttttcaactttcaccctattctac |
36151825 |
T |
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