View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_49 (Length: 378)
Name: NF3229_low_49
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 18218283 - 18218636
Alignment:
| Q |
9 |
agcacagacattatatatgcaattgaaataaaatcctcaatttgatgagaaccatactccatctaattacttagtggaatgaaaatattatcttcactac |
108 |
Q |
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| T |
18218283 |
agcacacacattatatatgcaattgaaataaaatcctcaatttgatgagaaccatactccatctaattacttagtggaatgaaaatattatcttcactac |
18218382 |
T |
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| Q |
109 |
tattataaacttcagcagcttctacctagttacgagnnnnnnntcctgcctgactgcacaaattttgcacctttctagaatctccacttggaggatgtta |
208 |
Q |
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| T |
18218383 |
tattataaacttcagcagcttctacctagttacgagaaaaaaatcctgcctgactgcacaaattttgcacctttctagaatctccacttggaggatgtta |
18218482 |
T |
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| Q |
209 |
gaacattacaccaatggacagcagctgatcataaatgacatccaggcatatgaagtttgcaacataatattagcaattatattagcaattggctagttta |
308 |
Q |
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| T |
18218483 |
gaacattacaccaatggacagcagctgatcataaatgacatccaggcatatgaagtttgcaacataatattagcaattatattagcaattggctagttta |
18218582 |
T |
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| Q |
309 |
atgttaacattcaatttgcaatctcatttgcaacataattgtaatataacttca |
362 |
Q |
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| T |
18218583 |
atgttaacattcaatttgcaatctcatttgcaacataattgtaatataacttca |
18218636 |
T |
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Back To:
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Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 88 - 253
Target Start/End: Original strand, 43010533 - 43010697
Alignment:
| Q |
88 |
tgaaaatattatcttcactactattataaacttcagcagcttctacctagttacgagnnnnnnntcctgcctgactgcacaaattttgcacctttctaga |
187 |
Q |
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| T |
43010533 |
tgaaaatattatcttcactac-attataaactttagcagcttctacctagttacgagaaaaaaatcctacctgattgcacaaattttgcacctttctaaa |
43010631 |
T |
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| Q |
188 |
atctccacttggaggatgttagaacattacaccaatggacagcagctgatcataaatgacatccag |
253 |
Q |
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| T |
43010632 |
atctccacttggaggatgttagaacattacaacaatggacagcagctgatcataaacgacatccag |
43010697 |
T |
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