View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_5 (Length: 555)

Name: NF3229_low_5
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_5
NF3229_low_5
[»] chr5 (1 HSPs)
chr5 (337-555)||(9169234-9169452)
[»] chr3 (6 HSPs)
chr3 (409-555)||(21219730-21219879)
chr3 (72-337)||(421428-421694)
chr3 (72-337)||(404383-404649)
chr3 (3-73)||(6456068-6456140)
chr3 (72-113)||(6456004-6456045)
chr3 (3-73)||(6760707-6760779)
[»] chr7 (5 HSPs)
chr7 (3-113)||(39675777-39675892)
chr7 (413-492)||(2704223-2704302)
chr7 (428-489)||(12653802-12653863)
chr7 (3-62)||(27981034-27981090)
chr7 (428-489)||(37625720-37625781)
[»] chr6 (2 HSPs)
chr6 (72-337)||(24180887-24181153)
chr6 (416-459)||(1366224-1366267)
[»] chr1 (1 HSPs)
chr1 (72-337)||(24361009-24361275)
[»] scaffold0040 (1 HSPs)
scaffold0040 (413-492)||(68325-68404)
[»] chr8 (2 HSPs)
chr8 (413-492)||(7253059-7253138)
chr8 (428-489)||(45274949-45275010)
[»] chr4 (1 HSPs)
chr4 (416-459)||(43526922-43526965)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 5e-85; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 337 - 555
Target Start/End: Complemental strand, 9169452 - 9169234
Alignment:
Q  337 taattgacaaatatcaatggcaaaagctacggtaggcaacctctttaggggagttaacannnnnnnnnnnnnggtatgtaaaatagatattaaccattgg 436  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||             || |||||||||||||||||||||||||    
T  9169452 taattgacaaatatcaatggcaaaggctacggtgggcaacctctttaggggagttaacatttttttttttttggcatgtaaaatagatattaaccattgg 9169353  T
Q  437 aagtatttgaaattttttgaagaccatattgttactgtactctctcaacactagatttccatcatccttctctcttcctctccatgtcttactcgcacca 536  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9169352 aagtatttgaaattttttgaagaccatactgttactgtactctctcaacactaaatttccatcatccttctctcttcctctccatgtcttactcgcacca 9169253  T
Q  537 ccaccaccaacagcaactg 555  Q
    |||||||||||||||||||    
T  9169252 ccaccaccaacagcaactg 9169234  T

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Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 409 - 555
Target Start/End: Original strand, 21219730 - 21219879
Alignment:
Q  409 ggtatgtaaaatagatattaaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacactagatttccatcatccttctc 508  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||    
T  21219730 ggtatgtaaaatagatattaaccattggatgtatttgaaattttttgaagaccatactattactatactctctcaacactagatttccatcatccttctc 21219829  T
Q  509 tcttcct-ctccatgtcttactcg--caccaccaccaccaacagcaactg 555  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  21219830 tcttcctcctccatgtcttactcgcccaccaccaccaccaacagcaactg 21219879  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 337
Target Start/End: Original strand, 421428 - 421694
Alignment:
Q  72 aagagaacacgaatatggagctatagttccggcacggtggctagcga-gactgagtaggtgtgcttttcattttgaaacggcaacagaaggaagagaaag 170  Q
    |||||||| |||||||| ||||||||||||| | ||||||| || || ||  |||||| ||||||||||||||  |||||||  | |||||||||||||     
T  421428 aagagaactcgaatatgaagctatagttccgtcgcggtggccagagatgatggagtagatgtgcttttcatttccaaacggctgcggaaggaagagaaac 421527  T
Q  171 agacggtggaaaataagctg-ggagggaagagaaactgtagcatgcgatgactgcttat-tannnnnnnattttaaaaaatagcaattactgtagcgcgt 268  Q
     |  | |||||||||||||| ||||| ||||||||||| ||  ||||||||||| || | |        |||||||||||  | |   ||||||||||||    
T  421528 ggtggctggaaaataagctgcggaggaaagagaaactgaag--tgcgatgactgattttatcattttttattttaaaaaactgtagacactgtagcgcgt 421625  T
Q  269 gggaagtaagctttttcacacgcccgtaaattttcgtatgctaacgtccgtactaaatagcagttctgt 337  Q
    || ||  ||| ||||  || ||||||| || |||||||||| | |||||||||||||||||||| ||||    
T  421626 ggaaaaaaagattttaaacgcgcccgtgaaatttcgtatgcgaccgtccgtactaaatagcagtactgt 421694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 337
Target Start/End: Complemental strand, 404649 - 404383
Alignment:
Q  72 aagagaacacgaatatggagctatagttccggcacggtggctagcga-gactgagtaggtgtgcttttcattttgaaacggcaacagaaggaagagaaag 170  Q
    |||||||| |||||||| ||||||||||||| | ||||||| |  || ||  |||||| ||||||||||||||  ||||||   | |||||||||||||     
T  404649 aagagaactcgaatatgaagctatagttccgtcgcggtggccatagatgatggagtagatgtgcttttcatttccaaacggttgcggaaggaagagaaac 404550  T
Q  171 agacggtggaaaataagctg-ggagggaagagaaactgtagcatgcgatgactgcttat-tannnnnnnattttaaaaaatagcaattactgtagcgcgt 268  Q
     |  | |||||||||||||| ||||| ||||||||||| |   ||||||||||| || | |        |||||||||||  |||   ||||||||||||    
T  404549 ggtggctggaaaataagctgcggaggaaagagaaactgaac--tgcgatgactgattttatcattttttattttaaaaaactgcagacactgtagcgcgt 404452  T
Q  269 gggaagtaagctttttcacacgcccgtaaattttcgtatgctaacgtccgtactaaatagcagttctgt 337  Q
    || || |||| ||||  || ||||||| || |||||||||| | |||||||||||||||||||| ||||    
T  404451 ggaaaataagattttaaacgcgcccgtgaaatttcgtatgcgaccgtccgtactaaatagcagtactgt 404383  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 6456140 - 6456068
Alignment:
Q  3 aagaaggagaagatgtgtgtcgaggaagaaagggatttttcgattttaagaacgaacatg--aatttgttgaa 73  Q
    |||||||||||||||||||||||||||||| ||||||||   |||||||||  |||||||  |||||||||||    
T  6456140 aagaaggagaagatgtgtgtcgaggaagaatgggattttctaattttaagagtgaacatgtaaatttgttgaa 6456068  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 6456045 - 6456004
Alignment:
Q  72 aagagaacacgaatatggagctatagttccggcacggtggct 113  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  6456045 aagagaacacaaatatggagctataattccggcacggtggct 6456004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 6760707 - 6760779
Alignment:
Q  3 aagaaggagaagatgtgtgtcgaggaagaaagggatttttcgattttaagaacgaacatg--aatttgttgaa 73  Q
    |||||||||||||||||||||||| ||||| ||||||||   |||||||||  |||||||  |||||||||||    
T  6760707 aagaaggagaagatgtgtgtcgagaaagaaggggattttctaattttaagagtgaacatgtaaatttgttgaa 6760779  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 39675892 - 39675777
Alignment:
Q  3 aagaaggagaagatgtgtgtcgaggaagaaagggatttttcgattttaagaacgaacatg--aatttgttg---aagagaacacgaatatggagctatag 97  Q
    |||||||||||||||||||||||||||||| |||||||| | |||||||||  |||||||  |||||||||   |||||||||| ||||||||||||||     
T  39675892 aagaaggagaagatgtgtgtcgaggaagaaggggattttccaattttaagagtgaacatgtaaatttgttgaaaaagagaacaccaatatggagctataa 39675793  T
Q  98 ttccggcacggtggct 113  Q
    ||||| ||||| ||||    
T  39675792 ttccgacacgggggct 39675777  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 492
Target Start/End: Original strand, 2704223 - 2704302
Alignment:
Q  413 tgtaaaatagatattaaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacactagat 492  Q
    |||||||||||||||||||||||||  ||||| ||||||| ||| ||||||  | ||| | |||||||||||| ||||||    
T  2704223 tgtaaaatagatattaaccattggatatatttaaaattttctgatgaccatgatattattatactctctcaacgctagat 2704302  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 489
Target Start/End: Original strand, 12653802 - 12653863
Alignment:
Q  428 aaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacacta 489  Q
    |||||||||| ||| |||||||||||||||||||||  | |||   ||||||||||||||||    
T  12653802 aaccattggatgtacttgaaattttttgaagaccatggtattatcatactctctcaacacta 12653863  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 27981034 - 27981090
Alignment:
Q  3 aagaaggagaagatgtgtgtcgaggaagaaagggatttttcgattttaagaacgaacatg 62  Q
    ||||||||||| ||||||||||||||||   |||||||| | |||||||||| |||||||    
T  27981034 aagaaggagaatatgtgtgtcgaggaag---gggattttccaattttaagaatgaacatg 27981090  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 489
Target Start/End: Original strand, 37625720 - 37625781
Alignment:
Q  428 aaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacacta 489  Q
    |||||||||| ||| |||||||||||||||||||||  | |||   ||||||||||||||||    
T  37625720 aaccattggatgtacttgaaattttttgaagaccatggtattatcatactctctcaacacta 37625781  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 337
Target Start/End: Complemental strand, 24181153 - 24180887
Alignment:
Q  72 aagagaacacgaatatggagctatagttccggcacggtggctagcga-gactgagtaggtgtgcttttcattttgaaacggcaacagaaggaagagaaag 170  Q
    |||||||| |||||||| ||||||||||||| | ||||||| || || ||  |||||| ||||||||||||||  |||||||  | |||||||||||||     
T  24181153 aagagaactcgaatatgaagctatagttccgtcgcggtggccagagatgatggagtagatgtgcttttcatttccaaacggctgcggaaggaagagaaac 24181054  T
Q  171 agacggtggaaaataagctg-ggagggaagagaaactgtagcatgcgatgactgcttat-tannnnnnnattttaaaaaatagcaattactgtagcgcgt 268  Q
     |  | |||||||||||||| ||||| ||||||||||| ||  ||| ||||||| || | |        |||||||||||   ||   ||||||||||||    
T  24181053 ggtggctggaaaataagctgcggaggaaagagaaactgaag--tgctatgactgattttatcattttttattttaaaaaactacagacactgtagcgcgt 24180956  T
Q  269 gggaagtaagctttttcacacgcccgtaaattttcgtatgctaacgtccgtactaaatagcagttctgt 337  Q
    || || |||| ||||  || ||||||| || |||||||||| | |||||||||||||||||||| ||||    
T  24180955 ggaaaataagattttaaacgcgcccgtgaaatttcgtatgcgaccgtccgtactaaatagcagtactgt 24180887  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 459
Target Start/End: Complemental strand, 1366267 - 1366224
Alignment:
Q  416 aaaatagatattaaccattggaagtatttgaaattttttgaaga 459  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  1366267 aaaatagatattaaccattagatgtatttgaaattttttaaaga 1366224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 337
Target Start/End: Original strand, 24361009 - 24361275
Alignment:
Q  72 aagagaacacgaatatggagctatagttccggcacggtggctagcga-gactgagtaggtgtgcttttcattttgaaacggcaacagaaggaagagaaag 170  Q
    |||||||| |||||||| ||||||||||||| | ||||||| || || ||  |||||| ||||||||||||||  |||||||  | |||||||||||||     
T  24361009 aagagaactcgaatatgaagctatagttccgtcgcggtggccagagatgatggagtagatgtgcttttcatttccaaacggctgcggaaggaagagaaac 24361108  T
Q  171 agacggtggaaaataagctg-ggagggaagagaaactgtagcatgcgatgactgcttat-tannnnnnnattttaaaaaatagcaattactgtagcgcgt 268  Q
     |  | |||||||||||||| ||||| ||||||||||| ||  ||| ||||||| || | |        |||||||||||  |||   ||||||||||||    
T  24361109 ggtggctggaaaataagctgcggaggaaagagaaactgaag--tgctatgactgattttatcattttttattttaaaaaactgcagacactgtagcgcgt 24361206  T
Q  269 gggaagtaagctttttcacacgcccgtaaattttcgtatgctaacgtccgtactaaatagcagttctgt 337  Q
    || || |||| ||||  || ||||||| || |||||||||| | ||||||||||| |||||||| ||||    
T  24361207 ggaaaataagattttaaacgcgcccgtgaagtttcgtatgcgaccgtccgtactatatagcagtactgt 24361275  T

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Target: scaffold0040 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 492
Target Start/End: Original strand, 68325 - 68404
Alignment:
Q  413 tgtaaaatagatattaaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacactagat 492  Q
    |||||||||||| ||||||||||||  ||||| |||  ||||||||| |||  | ||| | |||||||||||||||||||    
T  68325 tgtaaaatagatgttaaccattggatatatttaaaaacttttgaagatcatgatattattatactctctcaacactagat 68404  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 492
Target Start/End: Complemental strand, 7253138 - 7253059
Alignment:
Q  413 tgtaaaatagatattaaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacactagat 492  Q
    |||||||||||| |||| |||||||  |||||||||  |||||| ||||||  | ||| | |||||||||||||||||||    
T  7253138 tgtaaaatagatgttaatcattggatatatttgaaaacttttgatgaccatgatattattatactctctcaacactagat 7253059  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 489
Target Start/End: Complemental strand, 45275010 - 45274949
Alignment:
Q  428 aaccattggaagtatttgaaattttttgaagaccatattgttactgtactctctcaacacta 489  Q
    |||||||||| ||| |||||||||||||||||||||  | |||   ||||||||||||||||    
T  45275010 aaccattggatgtacttgaaattttttgaagaccatggtattatcatactctctcaacacta 45274949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 459
Target Start/End: Original strand, 43526922 - 43526965
Alignment:
Q  416 aaaatagatattaaccattggaagtatttgaaattttttgaaga 459  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  43526922 aaaatagatattaaccattagatgtatttgaaattttttaaaga 43526965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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