View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_52 (Length: 366)
Name: NF3229_low_52
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_52 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 40900635 - 40900285
Alignment:
| Q |
1 |
acaattctgccacttgctgagcttgtgcttggcctttcaattgaatatgctatttcaaaaaatatatattttatgtgttgttccaaccaaccgagctaaa |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40900635 |
acaattctgccacttgtagagcttgtgcttggcctttcaattgaatatgttatttcaaaaaatatatattttatgtgttgttccaaccaaccgagttaag |
40900536 |
T |
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| Q |
101 |
ctcacaaagatnnnnnnnnnnnnnn-ttatttagacacacacatcgcgtcatgaattgatatcatttaatattattctctattatttattctttagtttt |
199 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
40900535 |
ctcacgaagataaaaaaaaataaaaattatttagacacacacatcgcgtcatgaattgatatcatttaattttattctcttttatttattctttagtttt |
40900436 |
T |
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| Q |
200 |
gagtgcatgtccaatttttatttgagtttgtgtccaattaaatgtcaattttaaccgactttagtaacacacataactcgatttcatatttaattaaaat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
40900435 |
gagtgcatgtccaatttttatttgagtttgtgtccaattaaatgtcaattttaaccgactttagtaacacatataactcgatttcatatttacttaaaat |
40900336 |
T |
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| Q |
300 |
ttagaatcaaaatcatttatctagataatcaaacaaggtataatagtggtg |
350 |
Q |
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| T |
40900335 |
ttagaatcaaaatcatttatctagataatcaaacaaggtataatagtggtg |
40900285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 130 - 350
Target Start/End: Original strand, 65777 - 65999
Alignment:
| Q |
130 |
ttagacacacacat-cgcgtcatgaattgatatcatttaatattat-tctctattatttattctttagttttgagtgcatgtccaatttttatttgagtt |
227 |
Q |
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| T |
65777 |
ttagacacacacatacgcgtcatgaattgatatcatttaattttatatctcttttatttattctttagttttgagtgcatgtccaatttttatttgagtt |
65876 |
T |
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| Q |
228 |
tgtgtccaattaaatgtcaattttaaccgactttagtaacacacataactcgatttcatatttaattaaaatttagaatcaaaatcatttatctagataa |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
65877 |
tgtgtccaattaaatgtcaattttaaccgactttagtaacacatataactcgatttcatatttacttaaaatttagaatcaaaatcatttatctagataa |
65976 |
T |
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| Q |
328 |
tcaaacaaggtataatagtggtg |
350 |
Q |
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||||||||||||||||||||||| |
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| T |
65977 |
tcaaacaaggtataatagtggtg |
65999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 50143821 - 50143881
Alignment:
| Q |
1 |
acaattctgccacttgctgagcttgtgcttggcctttcaattgaatatgctatttcaaaaa |
61 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50143821 |
acaattctgccacttgcacagcttgtgcttggcctttcaattgaatatgctatttcaaaaa |
50143881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 43441073 - 43441034
Alignment:
| Q |
22 |
cttgtgcttggcctttcaattgaatatgctatttcaaaaa |
61 |
Q |
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|||||||||||| | ||||||||||||||||||||||||| |
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| T |
43441073 |
cttgtgcttggcttatcaattgaatatgctatttcaaaaa |
43441034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 28031851 - 28031810
Alignment:
| Q |
66 |
atattttatgtgttgttccaaccaaccgagctaaactcacaa |
107 |
Q |
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| T |
28031851 |
atattttatgcattgttccaaccaactgagctaaactcacaa |
28031810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 7202938 - 7202978
Alignment:
| Q |
66 |
atattttatgtgttgttccaaccaaccgagctaaactcaca |
106 |
Q |
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| T |
7202938 |
atattttatgcattgttccaaccaactgagctaaactcaca |
7202978 |
T |
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