View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_53 (Length: 365)
Name: NF3229_low_53
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 1717294 - 1716947
Alignment:
| Q |
18 |
cttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaaaaccaaatccttgccaataatagttaactttattgataattttattagagatcat |
117 |
Q |
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| T |
1717294 |
cttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaataccaaatccttgccaataatagttaactttattgataattttattagagatcat |
1717195 |
T |
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| Q |
118 |
gttatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtatagaaggggcgcctatgcaagactacca |
217 |
Q |
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| T |
1717194 |
attatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtatacaaggggcacctatgcaagactacca |
1717095 |
T |
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| Q |
218 |
aagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtgg |
317 |
Q |
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| T |
1717094 |
aagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtgg |
1716995 |
T |
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| Q |
318 |
ttgatcgagaatggttacataaagctctagatgc-aaggggttcttct |
364 |
Q |
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| T |
1716994 |
ttgatcgagaatggttacataaagctctagatgcaaaggggttcttct |
1716947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 120 - 362
Target Start/End: Complemental strand, 1738598 - 1738356
Alignment:
| Q |
120 |
tatatattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtatagaaggggcgcctatgcaagactaccaaa |
219 |
Q |
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| T |
1738598 |
tatatattgaggatatctaaatgattttacttttctattttggtaggggaatggacggctgaatggagcatacaaggtgcgtctatgcaagactaccaaa |
1738499 |
T |
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| Q |
220 |
gatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggtt |
319 |
Q |
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| T |
1738498 |
gatatgtccaaacacaaatggatgtatattctcgtgcaacatttggatgggctttttggtcctataaatgtcagaataacaaatggagtctcaagtggtt |
1738399 |
T |
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| Q |
320 |
gatcgagaatggttacataaagctctagatgcaaggggttctt |
362 |
Q |
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| T |
1738398 |
gatcgaaaatggttacataaagctctagatgtaaggggttctt |
1738356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 202 - 359
Target Start/End: Complemental strand, 1753662 - 1753505
Alignment:
| Q |
202 |
ctatgcaagactaccaaagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataacca |
301 |
Q |
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| T |
1753662 |
ctatgcaagactaccaaagatatggccaagcacaactagatgtgtattctcgtgcaacatttggatgggcttattgggcatacaaatgtcaatataacca |
1753563 |
T |
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| Q |
302 |
ttggagtctcaagtggttgatcgagaatggttacataaagctctagatgcaaggggtt |
359 |
Q |
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| T |
1753562 |
ttggagtctcaagtggatgatcgagaatggttacataaagctctagatgtaaggggtt |
1753505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 343
Target Start/End: Complemental strand, 1748381 - 1748265
Alignment:
| Q |
227 |
ccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgag |
326 |
Q |
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| T |
1748381 |
ccaagcccaattggatgtgtattctcgggcaacatttggatgggcttattggtcctacaaatgtcagtttaatcgttggagccttaagtggatgatcgag |
1748282 |
T |
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| Q |
327 |
aatggttacataaagct |
343 |
Q |
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| T |
1748281 |
aatggttacataaagct |
1748265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 1738791 - 1738727
Alignment:
| Q |
18 |
cttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaa--aaccaaatccttgccaat |
80 |
Q |
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| T |
1738791 |
cttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttgccaat |
1738727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 1748641 - 1748591
Alignment:
| Q |
23 |
tggtgtctcttcatcaaatgctcttagttttgtaggtaaaaaccaaatcct |
73 |
Q |
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| T |
1748641 |
tggtgtatcttcaacaaatgctcttacttttataggtaaaaaccaaatcct |
1748591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 38087047 - 38086985
Alignment:
| Q |
258 |
acatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttg |
320 |
Q |
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| T |
38087047 |
acatttggatgggcatattgggcttacaaatgtgactctaacaactggagtcttaagtggttg |
38086985 |
T |
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