View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_54 (Length: 365)
Name: NF3229_low_54
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 360
Target Start/End: Complemental strand, 3216678 - 3216325
Alignment:
| Q |
7 |
gaagacggtgttgatgtactttcaatctcccttaacggacccaccaaccctttctttgaagatgtaattgcacttggtgcatttagtgcaaatcaaaagg |
106 |
Q |
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| T |
3216678 |
gaagacggtgttgatgtactttcaatctcccttaacggacccaccaaccctttctttgaagatgtaattgcacttggtgcatttagtgcaaatcaaaagg |
3216579 |
T |
|
| Q |
107 |
gaattttcgttagttgctcagctggaaattttggtcctgattatggtacaacgtctaatgatgcaccatggattctaactgttggtgctagcacaaccga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
3216578 |
gaattttcgttagttgctcagctggaaattttggtcctgattatggtacaacgtctaatgaagcaccatggattctaactgttggtgctagcacaactga |
3216479 |
T |
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| Q |
207 |
tagaaaaatagaagcaatagctaaacttggcaacggggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccactt |
306 |
Q |
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| T |
3216478 |
tagaaaaatagaagcaatagctaaacttggcaacggggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccactt |
3216379 |
T |
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| Q |
307 |
gtgtatgcaggttctgttaatataagtgataattccattgccttctgtgctcct |
360 |
Q |
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| T |
3216378 |
gtgtatgcaggttctgttaatataagtgataattccattgccttttgtggtcct |
3216325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 55 - 360
Target Start/End: Complemental strand, 3208691 - 3208386
Alignment:
| Q |
55 |
cctttctttgaagatgtaattgcacttggtgcatttagtgcaaatcaaaagggaattttcgttagttgctcagctggaaattttggtcctgattatggta |
154 |
Q |
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| T |
3208691 |
cctttctttgaagatggaattgcacttggtgcatttagtgcaattcaaaaggggatttttgttagttgttcagctgcaaattcaggtcctttttatggta |
3208592 |
T |
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| Q |
155 |
caacgtctaatgatgcaccatggattctaactgttggtgctagcacaaccgatagaaaaatagaagcaatagctaaacttggcaacggggaaaaatatat |
254 |
Q |
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| T |
3208591 |
ctttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaattgaggcagtagctaagcttggcgacgggacagaatatct |
3208492 |
T |
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| Q |
255 |
tggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgtatgcaggttctgttaatataagtgataattccattgccttctgt |
354 |
Q |
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| T |
3208491 |
tggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgcaggttcaattaatacaagtgatgattccattgccttttgt |
3208392 |
T |
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| Q |
355 |
gctcct |
360 |
Q |
| |
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| |||| |
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| T |
3208391 |
ggtcct |
3208386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 56 - 350
Target Start/End: Complemental strand, 3202716 - 3202422
Alignment:
| Q |
56 |
ctttctttgaagatgtaattgcacttggtgcatttagtgcaaatcaaaagggaattttcgttagttgctcagctggaaattttggtcctgattatggtac |
155 |
Q |
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||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||| || |||||||||| |||||| | ||||||| |
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| T |
3202716 |
ctttctttgaaagtggaattgcacttggtgcatttagtgcaattcaaaagggaatttttgttagttgttctgctggaaattcaggtccttttcatggtac |
3202617 |
T |
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| Q |
156 |
aacgtctaatgatgcaccatggattctaactgttggtgctagcacaaccgatagaaaaatagaagcaatagctaaacttggcaacggggaaaaatatatt |
255 |
Q |
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| T |
3202616 |
attggctaatgaagcaccatggattttaactgttggtgccagcacaattgacagaaaaatagaggcagtagctaagcttggggatgggacggaatatctc |
3202517 |
T |
|
| Q |
256 |
ggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgtatgcaggttctgttaatataagtgataattccattgcctt |
350 |
Q |
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| T |
3202516 |
ggagaatcagttttccaaccaaaagactttgcatcaacattattgccacttgtgtatgcaggtgcaattaacacaagtgatgatttcattgcctt |
3202422 |
T |
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