View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_55 (Length: 362)
Name: NF3229_low_55
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 2854042 - 2853703
Alignment:
| Q |
16 |
gtatctgccataacatcatcaccaaaaagataagccatactcaacaatggcagaagattatgggtccacccttgaggataatgttttaaacagaatcctc |
115 |
Q |
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| T |
2854042 |
gtatctgccataacatcatcaccaaaaagataagccatactcaacaatggcagaagattatgggtccacccttgaggataatgttttaaacagaatcctc |
2853943 |
T |
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| Q |
116 |
tacaatgttttaaatcacgatcgtggtaacggtcacagtcatagtgatggtcaagatggcttcacagtccttcatattgtggagaattttagtcaaatga |
215 |
Q |
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| T |
2853942 |
tacaatgttttaaatcatgatcgtggtaacggtcacagtcatagtgatggtcaagatggcttcacagtccttcatattgtggagaattttagtcaaatga |
2853843 |
T |
|
| Q |
216 |
ggctaatactaccttaatcgcggtctaaaagttgttaaaaccatgatgtcagatcgacgtcaaaaaccaaaatgttgcggtccaaacctccagcgtgaac |
315 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2853842 |
ggctaatactaccttaatcgcggtcttaaagttgttaaaaccatgatgtcagatcgacgtcaaaaaccaaaatgttgcggtccaaacctccagcgtgaac |
2853743 |
T |
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| Q |
316 |
ctattttaaaaccttggtctatatcttgtaatattcttcg |
355 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||| |
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| T |
2853742 |
ctattttaaatccttggtctatatcttgtaatatgcttcg |
2853703 |
T |
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