View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_58 (Length: 357)

Name: NF3229_low_58
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_58
NF3229_low_58
[»] chr6 (1 HSPs)
chr6 (258-346)||(7927831-7927918)
[»] chr5 (1 HSPs)
chr5 (1-43)||(27351179-27351221)
[»] chr8 (1 HSPs)
chr8 (1-76)||(3575249-3575324)


Alignment Details
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 258 - 346
Target Start/End: Original strand, 7927831 - 7927918
Alignment:
Q  258 atttgaaacatctctttgcaaattattatgggttgtannnnnnnnaaacataaaaataaaagcaagttaagatgaaaagttgttagtga 346  Q
    |||||||||||||||||||||||||||||||||||||        |||||| |||||||||| ||||||||||||||||||||||||||    
T  7927831 atttgaaacatctctttgcaaattattatgggttgta-tttttttaaacatcaaaataaaagtaagttaagatgaaaagttgttagtga 7927918  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27351221 - 27351179
Alignment:
Q  1 ttagacttaaatttattttttgaggctcatagcatttggaggc 43  Q
    |||||||||||||||||||||||||| |||| |||||||||||    
T  27351221 ttagacttaaatttattttttgaggcccataacatttggaggc 27351179  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 3575249 - 3575324
Alignment:
Q  1 ttagacttaaatttattttttgaggctcatagcatttggaggcccgcctcagttgaataccttgcactccccaagg 76  Q
    |||||||||||||||||| ||||| | ||||||||||| | ||||  || | ||||  ||||||||||||||||||    
T  3575249 ttagacttaaatttatttgttgagtcccatagcatttgaatgcccaacttaattgaggaccttgcactccccaagg 3575324  T

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