View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_6 (Length: 543)

Name: NF3229_low_6
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_6
NF3229_low_6
[»] chr5 (4 HSPs)
chr5 (11-543)||(8820218-8820755)
chr5 (501-543)||(7096223-7096264)
chr5 (501-543)||(13224362-13224403)
chr5 (501-543)||(35135758-35135799)
[»] scaffold0590 (1 HSPs)
scaffold0590 (501-543)||(1170-1211)
[»] scaffold0275 (1 HSPs)
scaffold0275 (501-543)||(2764-2805)
[»] chr7 (2 HSPs)
chr7 (501-543)||(33894556-33894597)
chr7 (498-543)||(35809000-35809044)
[»] chr4 (2 HSPs)
chr4 (501-543)||(47970251-47970292)
chr4 (501-542)||(4191672-4191712)
[»] chr2 (4 HSPs)
chr2 (501-543)||(10143105-10143146)
chr2 (501-543)||(34054997-34055038)
chr2 (501-542)||(11344381-11344421)
chr2 (501-542)||(41033047-41033087)
[»] chr6 (2 HSPs)
chr6 (501-542)||(4247731-4247771)
chr6 (501-542)||(31461611-31461651)
[»] chr1 (2 HSPs)
chr1 (501-541)||(13037797-13037836)
chr1 (501-541)||(29046011-29046050)


Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 11 - 543
Target Start/End: Original strand, 8820218 - 8820755
Alignment:
Q  11 cagagatatcaaatgccaagagataaacagctactgtaactgcaatcaagttaaacacattgaagaactgcgtctctttattttcttctgtggaagttga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8820218 cagagatatcaaatgccaagagataaacagctactgtaactgcaatcaagttaaacacattgaagaactgcgtctctttattttcttctgtggaagttga 8820317  T
Q  111 agctggtggagtttcatgaaggaaaatagcagcaatgagacaaatgatggcaggaacaattgtgagcattaatagaaacttcgatgggtctgaggaaaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8820318 agctggtggagtttcatgaaggaaaatagcagcaatgagacaaatgatggcaggaacaattgtgagcattaatagaaacttcgatgggtctgaggaaaat 8820417  T
Q  211 aaagctgtgcatatgtcagtgaagattgctgtgctgagtcctacataaccctttagaatgccggaaattggaccacggttttttggaaagtttctcatgc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8820418 aaagctgtgcatatgtcagtgaagattgctgtgctgagtcctacataaccctttagaatgccggaaattggaccacgattttttggaaagtttctcatgc 8820517  T
Q  311 aagttacaagtactgctgtgttcatccatgtgctgctgtttccacccatacacaagaatatacacatctgcaaaatagttccaaagcaataaaataaatt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8820518 aagttacaagtactgctgtgttcatccatgtgctgctgtttccacccatacacaagaatatacacatctgcaaaatagttccaaagtaataaaataaatt 8820617  T
Q  411 ggttttttccttcttgaaatgctgtattcatccaacaccctgtctaa-----atatactacttaattaaacatttctataacaaaagatattataaagtg 505  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8820618 ggttttttccttcttgaaatgttgtattcatccaacaccctgtctaaatattatatactacttaattaaacatttctataacaaaagatattataaagtg 8820717  T
Q  506 cttatgtatagagatatttctataacaaaagataaaat 543  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8820718 cttatgtatagagatatttctataacaaaagataaaat 8820755  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 543
Target Start/End: Complemental strand, 7096264 - 7096223
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaat 543  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  7096264 aagtgcttatgtata-agctatttctataacaaaagataaaat 7096223  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 543
Target Start/End: Original strand, 13224362 - 13224403
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaat 543  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  13224362 aagtgcttatgtata-agctatttctataacaaaagataaaat 13224403  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 543
Target Start/End: Complemental strand, 35135799 - 35135758
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaat 543  Q
    ||||| ||||||||| |||||||||||||||||||||||||||    
T  35135799 aagtgtttatgtata-agatatttctataacaaaagataaaat 35135758  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 543
Target Start/End: Complemental strand, 1211 - 1170
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaat 543  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  1211 aagtgcttatgtata-agctatttctataacaaaagataaaat 1170  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 543
Target Start/End: Original strand, 2764 - 2805
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaat 543  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  2764 aagtgcttatgtata-agctatttctataacaaaagataaaat 2805  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 543
Target Start/End: Original strand, 33894556 - 33894597
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaat 543  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  33894556 aagtgcttatgtata-agctatttctataacaaaagataaaat 33894597  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 543
Target Start/End: Complemental strand, 35809044 - 35809000
Alignment:
Q  498 ataaagtgcttatgtatagagatatttctataacaaaagataaaat 543  Q
    |||||||| ||||||||| || ||||||||||||||||||||||||    
T  35809044 ataaagtgtttatgtata-agctatttctataacaaaagataaaat 35809000  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 543
Target Start/End: Original strand, 47970251 - 47970292
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaat 543  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  47970251 aagtgcttatgtata-agctatttctataacaaaagataaaat 47970292  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 542
Target Start/End: Original strand, 4191672 - 4191712
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaa 542  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  4191672 aagtgcttatgtata-agctatttctataacaaaagataaaa 4191712  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 543
Target Start/End: Original strand, 10143105 - 10143146
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaat 543  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  10143105 aagtgcttatgtata-agttatttctataacaaaagataaaat 10143146  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 543
Target Start/End: Complemental strand, 34055038 - 34054997
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaat 543  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  34055038 aagtgcttatgtatag-gctatttctataacaaaagataaaat 34054997  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 542
Target Start/End: Complemental strand, 11344421 - 11344381
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaa 542  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  11344421 aagtgcttatgcata-agatatttctataacaaaagataaaa 11344381  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 542
Target Start/End: Complemental strand, 41033087 - 41033047
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaa 542  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  41033087 aagtgcttatgtata-agctatttctataacaaaagataaaa 41033047  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 542
Target Start/End: Complemental strand, 4247771 - 4247731
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaa 542  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  4247771 aagtgcttatgtata-agctatttctataacaaaagataaaa 4247731  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 542
Target Start/End: Original strand, 31461611 - 31461651
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaaa 542  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  31461611 aagtgcttatgtata-agctatttctataacaaaagataaaa 31461651  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 541
Target Start/End: Original strand, 13037797 - 13037836
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaa 541  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  13037797 aagtgcttatgtata-agctatttctataacaaaagataaa 13037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 541
Target Start/End: Complemental strand, 29046050 - 29046011
Alignment:
Q  501 aagtgcttatgtatagagatatttctataacaaaagataaa 541  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  29046050 aagtgcttgtgtata-agatatttctataacaaaagataaa 29046011  T

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