View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_60 (Length: 354)
Name: NF3229_low_60
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 37016280 - 37016602
Alignment:
| Q |
17 |
atctccttcttcttcctctcctttttacaccttcaatgtcacatttaacgttagatctaacactttttcactcgttccactccttttcgttcattttgtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37016280 |
atctccttcttcttcctctcctttttacaccttcaatgtcacatttaacgttagatctaacactttttcactcgttccactccttttcgttcattttgtt |
37016379 |
T |
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| Q |
117 |
tagatctctgcgtttctattacctatacgttgttttttctcaattcattactatttttcgtgtaattttgataatattgcacaatttttactcgattaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37016380 |
tagatctctgcgtttctattacctatacgttgttttttctcaattcattactatttttcgtgtaattttgataatattgcacaatttttagtcgattaat |
37016479 |
T |
|
| Q |
217 |
ttcctgatactataatacgtaattttttactgttgtatttggcacttgcgtttgttttgtgttcattattcaacattcatggcttctctatcagatctaa |
316 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37016480 |
ttcctgatactataataagtaattttttactgttgtatttggcacttgcgtttgttttgtgttcattattcaacattcatggcttctctatcagatctaa |
37016579 |
T |
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| Q |
317 |
agatgaatctcgtttttcagtat |
339 |
Q |
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||||||||||||||||||||||| |
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| T |
37016580 |
agatgaatctcgtttttcagtat |
37016602 |
T |
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