View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_61 (Length: 353)
Name: NF3229_low_61
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 28284540 - 28284864
Alignment:
| Q |
18 |
tcttttcgctagtaattataatataatttgcgcgaatgttataattnnnnnnnnntgcaagagactgttattaccacatattagaccctgtctcttgaca |
117 |
Q |
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| T |
28284540 |
tcttttcgctagtaattataatatactttacgctaatgttataattaaaaaaaaatgcaagagactgttattaccacatatcagaccttgcctcttgaca |
28284639 |
T |
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| Q |
118 |
ttggtgacagctccactctctctccaatctacgctatctggaattggttttcttttcccttttggtgaattcgtaggtgaaatttcacttatattaaata |
217 |
Q |
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| T |
28284640 |
ttggtgacagctccactctctttccaatctacgctatctggaattggttttcttttcccttttggtgaattcgtaggtgaaatttcactcatattaaata |
28284739 |
T |
|
| Q |
218 |
taggtccagcagtggataccatagatgactctagttctcttttaagatcaacacaattatataaagcagcaaactcttcatttgttaaatcagagaatcg |
317 |
Q |
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| T |
28284740 |
taggtccagcagtggataccatagatgactctagttctcttttaagatcaacacaattatataaagcagcaaactcttcatttgttaaatcagagaattg |
28284839 |
T |
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| Q |
318 |
attcagacccaacttataagtctgt |
342 |
Q |
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| T |
28284840 |
attcagacccaacttataagtctgt |
28284864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 28004014 - 28003906
Alignment:
| Q |
109 |
ctcttgacattggtgacagctccactctctctccaatctacgctatctggaattggttttcttttcccttttggtgaattcgtaggtgaaatttcactta |
208 |
Q |
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| T |
28004014 |
ctcttgacactagtgacagctccgccctctctccaatctatgctttctggaattggttttctcttcccttttagtgaattgttagttgaaattttactca |
28003915 |
T |
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| Q |
209 |
tattaaata |
217 |
Q |
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|||||||| |
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| T |
28003914 |
cattaaata |
28003906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 28418162 - 28418244
Alignment:
| Q |
121 |
gtgacagctccactctctctccaatctacgctatctggaattggttttcttttcccttttggtgaattcgtaggtgaaatttc |
203 |
Q |
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| T |
28418162 |
gtgacagctccactatctctccaatctacaaaatctggaattctttttcttttctttattgatggattggtagttgaaatttc |
28418244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 27348641 - 27348588
Alignment:
| Q |
287 |
caaactcttcatttgttaaatcagagaatcgattcagacccaacttataagtct |
340 |
Q |
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| T |
27348641 |
caaactcttcatatgttaaatctgaaaattgattcaaacccaactcataagtct |
27348588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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